Abstract
This repository contains code and data needed to reproduce the manuscript by Babin et al. (2023). Evolution of key oxygen-sensing genes is associated with hypoxia tolerance in fishes.
Cite the repository as:
Babin CH, Leiva FP, Verberk WCEP & Rees BB. (2023). Paper data and code of manuscript: Evolution of key oxygen-sensing genes is associated with hypoxia tolerance in fishes. Zenodo. https://doi.org/10.5281/zenodo.10026473.
For any further information, please contact
Courtney H. Babin
Félix P. Leiva
Wilco C.E.P. Verberk
Bernard Rees
Licence
The authors provide this repository under the MIT License.
Folders:
DAPC_files: contain the data and R script details for the supplemental figures S1-S7.
positive_selection_files: contains the combined fasta files of MSA and phylogenies for the data used in DataMonkey analyses.
standardized_Pcrit: contain the data and R script to standardize Pcrit values at three temperatures for 174 fishes. The material in this folder is an extension of those already published in Global Change Biology, and which is publicly available at this link.
PGLS_files: encompasses all essential files and scripts required for implementing and fitting phylogenetic generalized least squares (PGLS) models.
