Data to: DNA methylation in clonal Duckweed lineages (Lemna minor L.) reflects current and historical environmental exposures.
Creators
Date of Archiving
2023Archive
Zenodo
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Publication type
Dataset
Access level
Open access
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Organization
Ecology
Audience(s)
Biology
Key words
DNA methylation, Transgenerational, Clonal Reproduction, Epigenetic Inheritance, Lemna minor, Temperature StressAbstract
The following depository contains raw phenotypic data and intermediate DNA methylation data presented in the article "DNA methylation in clonal Duckweed lineages (Lemna minor L.) reflects current and historical environmental exposures." : 1) Raw phenotypic data - Frond_area_Phase1_Phase2 -[greater than] Frond area measured at different time points (week 1, 6, 7 and 8) during the experiment. - Frond_number_Phase1_Phase2 -[greater than] Frond number measured at different time points (week 1, 6, 7 and 8) during the experiment. 2) Intermediate files obtained from running the epiGBS2 pipeline. The following files are available: - consensus_cluster.renamed.fa -[greater than] epiGBS de novo loci. This file consists of the de novo epiGBS reference sequence file obtained during the de novo reference creation. - methylation.filtMETH -[greater than] The filtered DNA methylation data. This data was obtained after filtering the raw DNA methylation data. Cytosines which had a 10X coverage or higher and which were present in 80% of all samples were kept for further analysis. Demultiplexed and raw datawere deposited at NCBI: BioProject:PRJNA883550 Copyright: Creative Commons Attribution 4.0 International Open Access
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