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ZMYND8 Co-localizes with NuRD on Target Genes and Regulates Poly(ADP-Ribose)-Dependent Recruitment of GATAD2A/NuRD to Sites of DNA Damage
Spruijt, C.G. ; Luijsterburg, M.S.; Menafra, R.; Lindeboom, R.G.H.; Jansen, P. W.; Edupuganti, V.S.R.R.; Baltissen, M.P.; Wiegant, W.W.; Voelker-Albert, M.C.; Matarese, F. ; Mensinga, A.; Poser, I.; Vos, H.R.; Stunnenberg, H. ; van Attikum, H.; Vermeulen, M. et al. sine al.
2016, Article / Letter to editor (Cell Reports, vol. 17, iss. 3, (2016), pp. 783-798)
Zebrafish as a Model to Study the Role of Peroxisome Proliferating-Activated Receptors in Adipogenesis and Obesity
Broeder, M.J. Den; Kopylova, V.A.; Kamminga, L.M.; Legler, J.
2015, Article / Letter to editor (Ppar Research, vol. 2015, (2015), pp. 358029)
Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila
Worpenberg, L.; Paolantoni, C.; Longhi, S.; Mulorz, M.; Lence, T.; Wessels, H-H.; Edupuganti, V.S.R.R.; Vermeulen, M. ; Soldano, A.; Roignant, J.Y.
2021, Article / Letter to editor (EMBO Journal, vol. 40, iss. 4, (2021), pp. 1-20, article e104975)
xIP-MS: topological analysis of chromatin-associated protein complexes using single affinity purification
Makowski, M.M.; Willems, E.; Jansen, P. W.; Vermeulen, M.
2015, Article / Letter to editor (Molecular & Cellular Proteomics, (2015))
Widespread horizontal genomic exchange does not erode species barriers among sympatric ducks
Kraus, R.H.S.; Kerstens, H.H.D.; Hooft, P. van; Megens, H.J.; Elmberg, J.; Tsvey, A.; Sartakov, D.; Soloviev, S.A.; Crooijmans, R.; Groenen, M.A.M.; Ydenberg, R.C.; Prins, H.H.T. et al. sine al.
2012, Article / Letter to editor (BMC Evolutionary Biology, vol. 12, (2012), article 45)
Whole-genome fingerprint of the DNA methylome during human B cell differentiation
Kulis, M.; Merkel, A.; Heath, S.; Queiros, A.C.; Schuyler, R.P.; Castellano, G.; Beekman, R.; Raineri, E.; Esteve, A.; Clot, G.; Verdaguer-Dot, N.; Duran-Ferrer, M.; Russinol, N.; Vilarrasa-Blasi, R.; Ecker, S.; Pancaldi, V.; Rico, D.; Agueda, L.; Blanc, J.; Richardson, D.; Clarke, L.; Datta, A.; Pascual, M.; Agirre, X.; Prosper, F.; Alignani, D.; Paiva, B.; Caron, G.; Fest, T.; Muench, M.O.; Fomin, M.E.; Lee, S.T.; Wiemels, J.L.; Valencia, A.; Gut, M.; Flicek, P.; Stunnenberg, H.G. ; Siebert, R.; Kuppers, R.; Gut, I.G.; Campo, E.; Martin-Subero, J.I. et al. sine al.
2015, Article / Letter to editor (Nature Genetics, vol. 47, (2015), pp. 746-756)
Whole-genome epigenomic analysis in multiple myeloma reveals DNA hypermethylation of b-cell specific enhancers
Agirre, X.; Castellano, G.; Pascual, M.; Health, S.; Kulis, M.; Segura, V.; Bergmann, A.; Esteve, A.; Merkel, A.; Raineri, E.; Agueda, L.; Blanc, J.; Richardson, D.; Clarke, L.; Russinol, N.; Queiros, A.C.; Beekman, R.; Rodriguez-Madoz, J.R.; Jose-Eneriz, E.S.; Fang, F.; Gutierrez, N.C.; Garcia-Verdugo, J.M.; Robson, M.I.; Schirmer, E.C.; Guruceaga, E.; Martens, J.H.A.; Gut, M.; Calasanz, M.J.; Flicek, P.; Siebert, R.; Campo, E.; Miguel, J.F.S.; Melnick, A.M.; Stunnenberg, H.G. ; Gut, I.G.; Prosper, F.; Martin-Subero, J.I. et al. sine al.
2014, Article / Letter to editor (Blood, vol. 124, iss. 21, (2014))
Whole-genome DNA methylation profiling using methylcap-seq
Brinkman, A.B. ; Simmer, F.; Ma, K.; Kaan, A.; Zhu, J.; Stunnenberg, H.G.
2010, Article / Letter to editor (Methods: a Journal for Human Science, vol. 52, iss. 3, (2010), pp. 232-236)
Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells
Habibi, E.; Brinkman, A.B. ; Arand, J.; Kroeze, L.; Kerstens, H.H.; Matarese, F. ; Lepikhov, K.; Gut, M.; Brun-Heath, I.; Hubner, N.C. ; Benedetti, R.; Altucci, L.; Jansen, J.H. ; Walter, J.; Gut, I.G.; Marks, H. ; Stunnenberg, H.G. et al. sine al.
2013, Article / Letter to editor (Cell Stem Cell, (2013))
Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells
Habibi, E.; Brinkman, A.B.; Arand, J.; Kroeze, L.; Kerstens, H.H.; Matarese, F. ; Lepikhov, K.; Gut, M.; Brun-Heath, I.; Hubner, N.C.; Benedetti, R.; Altucci, L.; Jansen, J.H. ; Walter, J.; Gut, I.G.; Marks, H. ; Stunnenberg, H.G. et al. sine al.
2013, Article / Letter to editor (Cell Stem Cell, vol. 13, iss. 3, (2013), pp. 360-369)
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
Agirre, X.; Castellano, G.; Pascual, M.; Heath, S.; Kulis, M.; Segura, V.; Bergmann, A.; Esteve, A.; Merkel, A.; Raineri, E.; Agueda, L.; Blanc, J.; Richardson, D.; Clarke, L.; Datta, A.; Russiñol, N.; Queirós, A.C.; Beekman, R.; Rodríguez-Madoz, J.R.; José-Enériz, E.S.; Fang, F.; Gutiérrez, N.C.; García-Verdugo, J.M.; Robson, M.I.; Schirmer, E.C.; Guruceaga, E.; Martens, J.H.A. ; Gut, M.; Calasanz, M.J.; Flicek, P.; Siebert, R.; Campo, E.; Miguel, J.F.S.; Melnick, A.; Stunnenberg, H.G. ; Gut, I.G.; Prosper, F.; Martín-Subero, J.I. et al. sine al.
2015, Article / Letter to editor (Genome Research, vol. 25, iss. 4, (2015), pp. 478-487)
Well-defined polymer architectures for controlled assembly: Beta-sheet containing hybrid block copolymers
Smeenk, J.M. ; Huizing, T.J.; Stunnenberg, H.G. ; Hest, J.C.M. van
2003, Article / Letter to editor (Abstract of Papers of the American Chemical Society, vol. 226, (2003), pp. U360)
We can still be friends: IFN-gamma breaks up macrophage enhancers
Novakovic, B.; Wang, C. ; Logie, C.
2017, Article / Letter to editor (Immunity, vol. 47, iss. 2, (2017), pp. 209-211)
Vitamin C and L-Proline Antagonistic Effects Capture Alternative States in the Pluripotency Continuum
D'Aniello, C.; Habibi, E.; Cermola, F.; Paris, D.; Russo, F.; Fiorenzano, A.; Di Napoli, G.; Melck, D.J.; Cobellis, G.; Angelini, C.; Fico, A.; Blelloch, R.; Motta, A.; Stunnenberg, H.G. ; De Cesare, D.; Patriarca, E.J.; Minchiotti, G. et al. sine al.
2016, Article / Letter to editor (Stem Cell Reports, vol. 8, iss. 1, (2016), pp. 1-10)
Viewing pluripotency from a multi-omics perspective
Mierlo, G. van
2019, Dissertation
Vesiculation of Red Blood Cells in the Blood Bank: A Multi-Omics Approach towards Identification of Causes and Consequences
Freitas Leal, J.K. ; Lasonder, Edwin; Sharma, V.; Schiller, J.; Fanelli, Giuseppina; Rinalducci, Sara; Brock, R.E. ; Bosman, G.J.
2020, Article / Letter to editor (Proteomes, vol. 8, iss. 2, (2020), article 6)
Vascular permeability factor expression influences tumor angiogenesis in human melanoma lines xenografted to nude mice
Potgens, A.J.G.; Lubsen, N.H. ; Altena, M.C. van; Schoenmakers, J.G.G. ; Ruiter, D.J. ; Waal, R.M.W. de
1995, Article / Letter to editor (American Journal of Pathology, vol. 146, (1995), pp. 197-209)
Uric acid priming in human monocytes is driven by the AKT-PRAS40 autophagy pathway
Crisan, T.O. ; Cleophas, M.C.P. ; Novakovic, B.; Erler, K.; Veerdonk, F.L. van de ; Stunnenberg, H.G. ; Netea, M.G. ; Dinarello, C.A. ; Joosten, L.A.B.
2017, Article / Letter to editor (Proceedings of the National Academy of Sciences USA, vol. 114, iss. 21, (2017), pp. 5485-5490)
Unveiling the chromatin fiber: epigenetics and spatial organization
Kuznetsova, T.
2017, Dissertation
Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human
Clerck, Laura De; Taelman, Jasin; Popovic, Mina; Willems, Sander; Jeught, Margot Van der; Heindryckx, Bjorn; Marks, Hendrik ; Deforce, Dieter; Dhaenens, Maarten
2019, Article / Letter to editor (Scientific Reports, vol. 9, (2019), article 17240)
Underreported and unknown student harassment at the Faculty of Science
Jussen, L.; Lagro-Janssen, T. ; Leenders, Joke; Logie, C. ; Mijdam, R.
2019, Article / Letter to editor (PLoS One, vol. 14, iss. 4, (2019), article e0215067)
Uncovering Common Principles in Protein Export of Malaria Parasites
Grüring, C.; Heiber, A.; Kruse, F.; Flemming, S.; Franci, G.; Colombo, Sara F.; Fasana, E.; Schoeler, H.; Borgese, N.; Stunnenberg, H.G. ; Przyborski, J.M.; Gilberger, T.-W.; Spielmann, T. et al. sine al.
2012, Article / Letter to editor (Cell Host & Microbe, vol. 12, iss. 5, (2012), pp. 717-729)
Uncleaved TFIIA is a substrate for taspase 1 and active in transcription
Zhou, Huiqing ; Spicuglia, S.; Hsieh, J.J.; Mitsiou, D.J.; Hoiby, T. ; Veenstra, G.J.C. ; Korsmeyer, S.J.; Stunnenberg, H.G.
2006, Article / Letter to editor (Molecular and Cellular Biology, vol. 26, iss. 7, (2006), pp. 2728-2735)
Two Functional Axes of Feedback-Enforced PRC2 Recruitment in Mouse Embryonic Stem Cells
Perino, M.; Mierlo, G. van; Loh, C.H.; Wardle, S.M.T.; Zijlmans, D.W.; Marks, H. ; Veenstra, G.J.C.
2020, Article / Letter to editor (Stem Cell Reports, vol. 15, iss. 6, (2020), pp. 1287-1300)
Tumor suppressor BTG1 promotes PRMT1-mediated ATF4 function in response to cellular stress
Yuniati, L.; Meer, L.T. van der ; Tijchon, E.J.H. ; Ingen Schenau, D.S. van ; Emst, L. van ; Levers, M.R. ; Palit, S.A.L.; Rodenbach, C.; Poelmans, G.J.V. ; Hoogerbrugge, P.M. ; Shan, J.; Kilberg, M.S.; Scheijen, G.P.H. ; Leeuwen, F.N. van et al. sine al.
2016, Article / Letter to editor (Oncotarget, vol. 7, iss. 3, (2016), pp. 3128-3143)
Tumor suppressor BTG1 limits activation of BCL6 expression downstream of ETV6-RUNX1
Tijchon, E.J.H. ; Emst, L. van ; Yuniati, L.; Ingen Schenau, D.S. van ; Gerritsen, M.; Meer, L.T. van der ; Williams, O.; Hoogerbrugge, P.M. ; Scheijen, B. ; Leeuwen, F.N. van
2018, Article / Letter to editor (Experimental Hematology, vol. 60, (2018), pp. 57-62.e3)
TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A
Pines, Alex; Dijk, Madelon; Makowski, M.M.; Meulenbroek, Elisabeth M.; Vrouwe, Mischa G.; Weegen, Yana van der; Vermeulen, Michiel ; Pannu, Navraj S.; Attikum, Haico van
2018, Article / Letter to editor (Nature Communications, vol. 9, (2018), pp. 1-14, article 1040)
Triblock copolymers of silk betasheet polypeptides and polyethlyenglycol-effect of polymer composition on assembly behavior
Smeenk, M.; Schon, P. ; Otten, M.B.J. ; Speller, Sylvia ; Stunnenberg, H.G. ; Hest, J.C.M. van
2006, Article / Letter to editor (Macromolecules, vol. 39, iss. 8, (2006), pp. 2989-2997)
Treatment with Statins Does Not Revert Trained Immunity in Patients with Familial Hypercholesterolemia
Bekkering, S. ; Stiekema, L.C.A.; Moens, S. Bernelot; Verweij, S.L.; Novakovic, Boris; Prange, K.; Versloot, M.; Lennep, J.E.Roeters van; Stunnenberg, H. ; Winther, M. de; Stroes, E.S.; Joosten, L.A.B. ; Netea, M.G. ; Riksen, N.P. et al. sine al.
2019, Article / Letter to editor (Cell Metabolism, vol. 30, iss. 1, (2019), pp. 1-2)
Treatment of mesenteric desmoid tumours with the antioestrogenic agent toremifene: case histories and an overview of the literature.
Bus, P.J.; Verspaget, H.W.; Krieken, J.H.J.M. van ; Roos, A.D.G. de ; Keizer, H.J. ; Bemelman, W.A.; Vasen, H.F.; Lamers, C.B.H.W.; Griffioen, G.
1999, Article / Letter to editor (European Journal of Gastroenterology & Hepatology, vol. 11, (1999), pp. 1179-1183)
Treatment efficacy of adipose-derived stem cells in experimental osteoarthritis is driven by high synovial activation and reflected by S100A8/A9 serum levels
Schelbergen, R.F.P.; Dalen, S. van; Huurne, M.C. ter ; Roth, J.; Vogl, T.; Noel, D.; Jorgensen, C.; Berg, W.B. van den ; Loo, F.A.J. van de ; Blom, A.B. ; Lent, P.L.E.M. van et al. sine al.
2014, Article / Letter to editor (Osteoarthritis and Cartilage, vol. 22, iss. 8, (2014), pp. 1158-1166)
Transcriptome Analysis Using RNA-Seq
Hoeijmakers, W.A.M.; Bartfai, R.C. ; Stunnenberg, H.
2013, Part of book or chapter of book (Ménard, R. (ed.), Malaria, pp. 221-239)
Transcriptional profiling reveals monocyte-related macrophages phenotypically resembling DC in human intestine
Richter, L.; Landsverk, O.J.B.; Atlasy, N.; Bujko, A.; Yaqub, S.; Horneland, R.; Stunnenberg, H.G. ; Baekkevold, Espen S.; Jahnsen, F.L.
2018, Article / Letter to editor (Mucosal Immunology, vol. 11, iss. 5, (2018), pp. 1512-1523)
Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells
De Simone, M.; Arrigoni, A.; Rossetti, G.; Gruarin, P.; Ranzani, V.; Politano, C.; Bonnal, R.J.; Provasi, E.; Sarnicola, M.L.; Panzeri, I.; Moro, M.; Crosti, M.; Mazzara, S.; Vaira, V.; Bosari, S.; Palleschi, A.; Santambrogio, L.; Bovo, G.; Zucchini, N.; Totis, M.; Gianotti, L.; Cesana, G.; Perego, R.A.; Maroni, N.; Pisani Ceretti, A.; Opocher, E.; De Francesco, R.; Geginat, J.; Stunnenberg, H. ; Abrignani, S.; Pagani, M. et al. sine al.
2016, Article / Letter to editor (Immunity, vol. 45, iss. 5, (2016), pp. 1135-1147)
Transcriptional diversity during lineage commitment of human blood progenitors
Chen, L.; Kostadima, M.; Martens, J.H.; Canu, G.; Garcia, S.P.; Turro, E.; Downes, K.; Macaulay, I.C.; Bielczyk-Maczynska, E.; Coe, S.; Farrow, S.; Poudel, P.; Burden, F.; Jansen, S.B.; Astle, W.J.; Attwood, A.; Bariana, T.; Bono, B. de; Breschi, A.; Chambers, J.C.; Consortium, B.; Choudry, F.A.; Clarke, L.; Coupland, P.; Ent, M. van der; Erber, W.N.; Jansen, J.H. ; Favier, R.; Fenech, M.E.; Foad, N.; Freson, K.; Geet, C. Van; Gomez, K.; Guigo, R.; Hampshire, D.; Kelly, A.M.; Kerstens, H.H.; Kooner, J.S.; Laffan, M.; Lentaigne, C.; Labalette, C.; Martin, T.; Meacham, S.; Mumford, A.; Nürnberg, S.; Palumbo, E.; Reijden, B.A. van der ; Richardson, D.; Sammut, S.J.; Slodkowicz, G.; Tamuri, A.U.; Vasquez, L.; Voss, K.; Watt, S.; Westbury, S.; Flicek, P.; Loos, R.; Goldman, N.; Bertone, P.; Read, R.J.; Richardson, S.; Cvejic, A.; Soranzo, N.; Ouwehand, W.H.; Stunnenberg, H.G. ; Frontini, M.; Rendon, A. et al. sine al.
2014, Article / Letter to editor (Science, vol. 345, iss. 6204, (2014), pp. 1251033)
Transcriptional and functional profiling defines human small intestinal macrophage subsets
Bujko, Anna; Atlasy, N.; Landsverk, Ole J.B.; Richter, L.; Yaqub, Sheraz; Horneland, Rune; Stunnenberg, Hendrik G. ; Baekkevold, Espen S.; Jahnsen, Frode L.
2018, Article / Letter to editor (Journal of Experimental Medicine, vol. 215, iss. 2, (2018), pp. 441-458)
Transcriptional and epigenetic control in mouse pluripotency: Lessons from in vivo and in vitro studies
Habibi, E.; Stunnenberg, H.
2017, Article / Letter to editor (Current Opinion in Genetics & Development, vol. 46, (2017), pp. 114-122)
Transcription regulation of human genes: Novel aspects and mechanisms
Denissov, S.
2008, Dissertation
Transcription regulation and chromatin structure in the pluripotent ground state
Marks, H. ; Stunnenberg, H.G.
2013, Article / Letter to editor (Biochimica et Biophysica Acta, (2013))
Transcription of gypsy elements in a Y chromosome male fertility gene of Drodophila hydei
Hochstenbach, R.; Harhangi, R.H. ; Schouren, K.; Bindels, P.C.T. ; Suijkerbuijk, R.F. ; Hennig, W.H.G.
1996, Article / Letter to editor (Genetics (Austin), vol. 142, (1996), pp. 437-446)
Transcription factors and gene regulatory elements in the human malaria parasite Plasmodium falciparum
Toenhake, C.G.
2020, Dissertation
Transcription factor p63 bookmarks and regulates dynamic enhancers during epidermal differentiation
Kouwenhoven, E.N. ; Oti, M.; Niehues, H. ; Heeringen, S.J. van; Schalkwijk, J. ; Stunnenberg, H.G. ; Bokhoven, H. van ; Zhou, H.
2015, Article / Letter to editor (EMBO Reports, vol. 16, iss. 7, (2015), pp. 863-878)
Transcript Dynamics and Diversity during Xenopus Development and Evolution
Paranjpe, S.S.
2018, Dissertation
Trained immunity: A program of innate immune memory in health and disease
Netea, M.G. ; Joosten, L.A. ; Latz, E.; Mills, K.H.; Natoli, G.; Stunnenberg, H.G. ; O'Neill, L.A.; Xavier, R.J.
2016, Article / Letter to editor (Science, vol. 352, iss. 6284, (2016), pp. 427-438)
Tracking the embryonic stem cell transition from ground state pluripotency
Kalkan, T.; Olova, N.; Roode, M.; Mulas, C.; Lee, H.J.; Nett, I.; Marks, H. ; Walker, R.; Stunnenberg, H. ; Lilley, K.S.; Nichols, J.; Reik, W.; Bertone, P.; Smith, A. et al. sine al.
2017, Article / Letter to editor (Development, (2017), pp. 1-56)
Towards elucidating the stability, dynamics and architecture of the nucleosome remodeling and deacetylase complex by using quantitative interaction proteomics
Kloet, S.L.; Baymaz, H.I.; Makowski, M.M.; Groenewold, V.; Jansen, P.; Berendsen, M.; Niazi, H.; Kops, G.J.; Vermeulen, M.
2015, Article / Letter to editor (FEBS Journal, vol. 282, iss. 9, (2015), pp. 1774-1785)
Towards cracking the epigenetic code using a combination of high-throughput epigenomics and quantitative mass spectrometry-based proteomics
Stunnenberg, H.G. ; Vermeulen, M.
2011, Article / Letter to editor (Bioessays, vol. 33, iss. 7, (2011), pp. 547-551)
Time-resolved analysis of DNA-protein interactions in living cells by UV laser pulses
Nebbioso, A; Benedetti, R.; Conte, M.; Carafa, V.; Bellis, F. de; Shaik, J. ; Matarese, F. ; Della Ventura, B.; Gesuele, F.; Velotta, R.; Martens, J.H.A. ; Stunnenberg, H.G. ; Altucci, C.; Altucci, L. et al. sine al.
2017, Article / Letter to editor (Scientific Reports, vol. 7, (2017), pp. 1-13, article 11725)
Time for Epigenetics
Altucci, L.; Stunnenberg, H.G.
2009, Article / Letter to editor (International Journal of Biochemistry & Cell Biology, vol. 41, iss. 1, (2009), pp. 2-3)
Three members of the 6-cys protein family of Plasmodium play a role in gamete fertility.
Dijk, M.R. van; Schaijk, B.C.L. van ; Khan, S.M.; Dooren, M.W. van; Ramesar, J.; Kaczanowski, S.; Gemert, G.J.A. van ; Kroeze, H.; Stunnenberg, H.G. ; Eling, W.M.C. ; Sauerwein, R.W. ; Waters, A.P.; Janse, C.J. et al. sine al.
2010, Article / Letter to editor (Plos Pathogens, vol. 6, iss. 4, (2010), pp. e1000853)

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