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(Endo)symbiotic Methanogenic Archaea

Hackstein, J.H.P. ; Graaf, R.M. de

2018, Book (monograph)
Isolation and identification of 4-alpha-rhamnosyloxy benzyl glucosinolate in noccaea caerulescens showing intraspecific variation

Graaf, R.M. de; Krosse, S.; Swolfs, A.E.M.; Brinke, E. te; Prill, N.; Leimu, R.; Galen, P.M. van; Wang, Y.; Aarts, M.G.M.; Dam, N.M. van

2015, Article / Letter to editor (Phytochemistry, vol. 110, (2015), pp. 166-171)
Allelopathic effects of glucosinolate breakdown products in hanza (boscia senegalensis (pers.) lam.) processing waste water

Rivera-Vega, L.J.; Krosse, S.; Graaf, R.M. de; Garvi, J.; Garvi, R.; Dam, N.M. van

2015, Article / Letter to editor (Frontiers in Plant Science, vol. 6, (2015), article 532)
A metagenomics-based metabolic model of nitrate-dependent anaerobic oxidation of methane by Methanoperedens-like archaea

Arshad, A.; Speth, D.R. ; Graaf, R.M. de; Camp, H.J.M. op den ; Jetten, M.S.M. ; Welte, C.U.

2015, Article / Letter to editor (Frontiers in Microbiology, vol. 6, (2015), article 1423)
Dealing with double trouble: Consequences of single and double herbivory in brassica juncea

Mathur, V.; Tytgat, T.O.G.; Graaf, R.M. de; Kalia, V.; Reddy, A. Sankara; Vet, L.E.M.; Dam, N.M. van

2013, Article / Letter to editor (Chemoecology, vol. 23, iss. 2, (2013), pp. 71-82)
On-line detection of root-induced volatiles in brassica nigra plants infested with delia radicum l. Root fly larvae

Crespo, E.; Hordijk, C.A.; Graaf, R.M. de; Samudrala, D.; Cristescu, S.M. ; Harren, F.J.M. ; Dam, N.M. van

2012, Article / Letter to editor (Phytochemistry, vol. 84, (2012), pp. 68-77)
On-line detection of root-induced volatiles in brassica nigra plants infested with delia radicum l. Root fly larvae

Crespo, E.; Hordijk, C.A.; Graaf, R.M. de; Samudrala, D.; Cristescu, S.M. ; Harren, F.J.M. ; Dam, N.M. van

2012, Article / Letter to editor (Phytochemistry, vol. 84, (2012), pp. 68-77)
Hydrogenosomes and mitosomes: Mitochondrial adaptations to life in anaerobic environments

Graaf, R.M. de; Hackstein, J.H.P.

2011, Part of book or chapter of book (Altenbach., A.V.; Bernhard, J.M.; Seckbach, J. (ed.), Anoxia, pp. 83-112)
The organellar genome and metabolic potential of the hydrogen-producing mitochondrion of Nyctotherus ovalis

Graaf, R.M. de; Ricard, G.N.S. ; Alen, T.A. van; Duarte, I. ; Dutilh, B.E. ; Burgtorf, C.; Kuiper, J.W.; Staay, G.W.M. van der ; Tielens, A.G.G.M. ; Huynen, M.A. ; Hackstein, J.H. et al. sine al.

2011, Article / Letter to editor (Molecular Biology and Evolution, vol. 28, iss. 8, (2011), pp. 2379-2391)
A mitochondrial origin for hydrogenosomes

Graaf, R.M. de

2010, Dissertation
The hydrogenosomes of Psalteriomonas lanterna

Graaf, R.M. de; Duarte, I. ; Alen, T. van; Kuiper, J.W.P. ; Schotanus, K.; Rosenberg, J.; Huynen, M.A. ; Hackstein, J.H.P.

2009, Article / Letter to editor (BMC Evolutionary Biology, vol. 9, (2009), pp. 287)
The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

Graaf, R.M. de; Alen, T.A. van; Dutilh, B.E. ; Kuiper, J.W.P. ; Zoggel, H.J. van; Huynh, M.B.; Gortz, H.D.; Huynen, M.A. ; Hackstein, J.H.P.

2009, Article / Letter to editor (BMC Genomics, vol. 10, (2009), pp. 514-1-514-14)
Origin of Spanish invasion by the zebra mussel, Dreissena polymorpha (Pallas, 1771) revealed by amplified fragment length polymorphism (AFLP) fingerprinting.

Rajagopal, S. ; Pollux, B.A.J. ; Peters, J.L. ; Cremers, G.; Moon-van der Staay, S.Y. ; Alen, T. van; Eygensteyn, J.; Hoek, A.H.A.M. van ; Palau, A.; Vaate, A. bij de; Velde, G. van der et al. sine al.

2009, Article / Letter to editor (Biological Invasions, vol. 11, iss. 9, (2009), pp. 2147-2159)
Macronuclear genome structure of the ciliate Nyctotherus ovalis: Single-gene chromosomes and tiny introns.

Ricard, G.N.S. ; Graaf, R.M. de; Dutilh, B.E. ; Duarte, I. ; Alen, T.A. van; Hoek, A.H. van; Boxma, B. ; Staay, G.W.M. van der ; Moon-van der Staay, S.Y. ; Chang, W.; Landweber, L.F.; Hackstein, J.H.P. ; Huijnen, M.A. et al. sine al.

2008, Article / Letter to editor (BMC Genomics, vol. 9, iss. 1, (2008), pp. 587)
The competitive success of Methanomicrococcus blatticola, a dominant methylotrophic methanogen in the cockroach hindgut, is supported by high substrate affinities and favorable thermodynamics

Sprenger, W.W.; Hackstein, J.H.P. ; Keltjens, J.T.M.

2007, Article / Letter to editor (FEMS Microbiology Ecology, vol. 60, iss. 2, (2007), pp. 266-275)
The [FeFe] hydrogenase of Nyctotherus ovalis has a chimeric origin.

Boxma, B. ; Ricard, G.N.S. ; Hoek, A.H.A.M. van ; Severing, E.; Moon-van der Staay, S.Y. ; Staay, G.W.M. van der ; Alen, T.A. van; Graaf, R.M. de; Cremers, G.; Kwantes, M.; McEwan, N.R.; Newbold, C.J.; Jouany, J.P.; Michalowski, T.; Pristas, P.; Huynen, M.A. ; Hackstein, J.H.P. et al. sine al.

2007, Article / Letter to editor (BMC Evolutionary Biology, vol. 7, (2007), article 230)
The (FeFe) hydrogenase of Nyctotherus ovalis has a chimeric origin.

Boxma, B. ; Ricard, G.N.S. ; Hoek, A.H. van; Severing, E.; Moon-van der Staay, S.Y. ; Staay, G.W.M. van der ; Alen, T.A. van; Graaf, R.M. de; Cremers, G.; Kwantes, M.; McEwan, N.R.; Newbold, C.J.; Joany, J.P.; Michalowski, T.; Pristas, P.; Huynen, M.A. ; Hackstein, J.H.P. et al. sine al.

2007, Article / Letter to editor (BMC Evolutionary Biology, vol. 7, (2007), article 230)
Contribution by the methanogenic endosymbionts of anaerobic ciliates to methane production in Dutch freshwater sediments

Hoek, A.H.A.M. van ; Alen, T.A. van; Vogels, G.D.; Hackstein, J.H.P.

2006, Article / Letter to editor (Acta Protozoologica, vol. 45, iss. 3, (2006), pp. 215-224)
The energy metabolism of Methanomicrococcus blatticola: physiological and biochemical aspects

Sprenger, W.W.; Hackstein, J.H.P. ; Keltjens, J.T.M.

2005, Article / Letter to editor (Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, vol. 87, iss. 4, (2005), pp. 289-299)
An anaerobic mitochondrion that produces hydrogen

Boxma, B. ; Graaf, R.M. de; Staay, G.W.M. van der ; Alen, T.A. van; Ricard, G.N.S. ; Gabaldon, T.; Hoek, A.H.A.M. van ; Moon-van der Staay, S.Y. ; Koopman, W.J.H. ; Hellemond, J.J. van; Tielens, A.G.G.M. ; Friedrich, T.; Veenhuis, M.; Huynen, M.A. ; Hackstein, J.H.P. et al. sine al.

2005, Article / Letter to editor (Nature, vol. 434, iss. 7029, (2005), pp. 74-79)
Contribution by the methanogenic endosymbionts of anaerobic ciliates to methane production in Dutch freshwater sediments

Hoek, A.H.A.M. van ; Alen, T.A. van; Vogels, G.D.; Hackstein, J.H.P.

2004, Article / Letter to editor (Berichte des Naturwissenschaftlich-Medizinischen Vereins in Innsbruck. Supplementum, vol. 15, (2004), pp. 75)
Contribution by the methanogenic endosymbionts of anaerobic ciliates to methane production in Dutch freshwater sediments

Hoek, A.H.A.M. van ; Alen, T.A. van; Vogels, G.D.; Hackstein, J.H.P.

2004, Article in monograph or in proceedings (Abstracts Jahrestagung der DGP)
Gene-sized macronuclear chromosomes in the anaerobic ciliate Nyctotherus ovalis

Hoek, A.H.A.M. van ; Alen, T.A. van; Staay, G.W.M. van der ; Moon-van der Staay, S.Y. ; Boxma, B. ; Hackstein, J.H.P.

2004, Article in monograph or in proceedings (n.a., pp. S31)
A mitochondrial genome in the hydrogenosomes of the ciliate Nyctotherus ovalis

Staay, G.W.M. van der ; Graaf, R.M. de; Alen, T.A. van; Moon-van der Staay, S.Y. ; Boxma, B. ; Hoek, A.H.A.M. van ; Gabaldon, T.; Huynen, M.A. ; Hackstein, J.H.P.

2004, Article / Letter to editor (Berichte des Naturwissenschaftlich-Medizinischen Vereins in Innsbruck. Supplementum, vol. 15, (2004), pp. 74)
Novel Fe-hydrogenases from the rumen ciliate metagenome. Hydrogenase

Severing, E.; Boxma, B. ; Alen, T.A. van; Ricard, G.N.S. ; Hoek, A.H.A.M. van ; Moon-van der Staay, S.Y. ; Staay, G.W.M. van der ; Graaf, R.M. de; Cremers, G.; Kwantes, M.; McEwan, N.R.; Newbold, C.J.; Jouany, J.P.; Michalowski, T.; Pristas, P.; Huynen, M.A. ; Hackstein, J.H.P. et al. sine al.

2004, Article in monograph or in proceedings (Abstracts 7th International Hydrogenase Conference, pp. 36)
A mitochondrial genome in the hydrogenosomes of the ciliate Nyctotherus ovalis

Staay, G.W.M. van der ; Graaf, R.M. de; Alen, T.A. van; Moon-van der Staay, S.Y. ; Boxma, B. ; Hoek, A.H.A.M. van ; Gabaldon, T.; Huynen, M.A. ; Hackstein, J.H.P.

2004, Article in monograph or in proceedings (Abstracts Jahrestagung der DGP)
A mitochondrial genome in the hydrogenosomes of the ciliate Nyctotherus ovalis

Graaf, R.M. de; Staay, G.W.M. van der ; Alen, T.A. van; Moon-van der Staay, S.Y. ; Boxma, B. ; Hackstein, J.H.P.

2004, Article in monograph or in proceedings (Biospektrum Sonderausgabe 2004, pp. 153)
A divergent ADP/ATP carrier in the hydrogenosomes of Trichomonas gallinae argues for an independent origin of these organelles.

Tjaden, J.; Haferkamp, I.; Boxma, B. ; Tielens, A.G.G.M. ; Huynen, M.A. ; Hackstein, J.H.P.

2004, Article / Letter to editor (Molecular Microbiology, vol. 51, iss. 5, (2004), pp. 1439-1446)
A divergent ADP/ATP carrier in the hydrogenosomes of Trichomonas gallinae argues for an independent origin of these organelles

Tjaden, J.; Haferkamp, I.; Boxma, B. ; Tielens, A.G.G.M. ; Huynen, M.A. ; Hackstein, J.H.P.

2004, Article / Letter to editor (Molecular Microbiology, vol. 51, iss. 5, (2004), pp. 1439-1446)
The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an alcohol dehydrogenase E

Boxma, B. ; Voncken, F.G.J. ; Jannink, S.A. ; Alen, T.A. van; Akhmanova, A.S. ; Weelden, S.W. van; Hellemond, J.J. van; Ricard, G.N.S. ; Huynen, M.A. ; Tielens, A.G.G.M. ; Hackstein, J.H.P. et al. sine al.

2004, Article / Letter to editor (Molecular Microbiology, vol. 51, iss. 5, (2004), pp. 1389-1399)
The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an alcohol dehydrogenase E.

Boxma, B. ; Voncken, F.L.M. ; Jannink, S.A. ; Alen, T.A. van; Akhmanova, A.S. ; Weelden, S.W. van; Hellemond, J.J. van; Ricard, G.N.S. ; Huynen, M.A. ; Tielens, A.G.G.M. ; Hackstein, J.H.P. et al. sine al.

2004, Article / Letter to editor (Molecular Microbiology, vol. 51, iss. 5, (2004), pp. 1389-1399)
Multiple origins of hydrogenosomes: functional and phylogenetic evidence from the ADP/ATP carrier of the anaerobic chytrid Neocallimastix sp.

Voncken, F.L.M. ; Boxma, B. ; Tjaden, J.; Akhmanova, A.S. ; Huynen, M.A. ; Verbeek, F.; Tielens, A.G.; Haferkamp, I.; Neuhaus, H.E.; Vogels, G.D.; Veenhuis, M.; Hackstein, J.H.P. et al. sine al.

2002, Article / Letter to editor (Molecular Microbiology, vol. 44, iss. 6, (2002), pp. 1441-1454)
A hydrogenosomal [Fe]-hydrogenase from the anaerobic chytrid Neocallimastix sp. L2.

Voncken, F.G.J. ; Boxma, B. ; Hoek, A.H.A.M. van ; Akhmanova, A.S. ; Vogels, G.D.; Huynen, M.A. ; Veenhuis, M.; Hackstein, J.H.P.

2002, Article / Letter to editor (Gene, vol. 284, iss. 1-2, (2002), pp. 103-112)
Hydrogenosomes: convergent adaptions of mitochondria to anaerobic environments

Hackstein, J.H.P. ; Akhmanova, A.S. ; Voncken, F.G.J. ; Hoek, A.; Alen, T.A. van; Boxma, B. ; Moon-van der Staay, S.Y. ; Leunissen, J.A.M. ; Huynen, M.A. ; Rosenberg, J.; Veenhuis, R.T. et al. sine al.

2001, Article / Letter to editor (Abstracts, vol. 104, (2001), pp. 290-302)
Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates

Hoek, A.H.A.M. van ; Alen, T.A. van; Sprakel, V.S.; Leunissen, J.A.M. ; Brigge, T.; Vogels, G.D.; Hackstein, J.H.P.

2000, Article / Letter to editor (Molecular Biology and Evolution, iss. 17, (2000), pp. 251-258)
A mitochondrial ancestry of the hydrogenosomes of Nyctotherus ovalis.

Hoek, A.H.A.M. van ; Akhmanova, A.S. ; Huynen, M.A. ; Hackstein, J.H.P.

2000, Article / Letter to editor (Molecular Biology and Evolution, vol. 17, iss. 1, (2000), pp. 202-206)
Voltage-dependent reversal of anodic galvanotaxis in Nycotherus ovalis

Hoek, A.H.A.M. van ; Sprakel, V.S.; Alen, T.A. van; Theuvenet, A.P.R. ; Vogels, G.D.; Hackstein, J.H.P.

1999, Article / Letter to editor (The Journal of Eukaryotic Microbiology, vol. 46, (1999), pp. 427-433)

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