Browsing by Author "Vermeulen, M."

Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila

Worpenberg, L.; Paolantoni, C.; Longhi, S.; Mulorz, M.; Lence, T.; Wessels, H-H.; Edupuganti, V.S.R.R.; Vermeulen, M. ; Soldano, A.; Roignant, J.Y.

2021, Article / Letter to editor (EMBO Journal, vol. 40, iss. 4, (2021), pp. 1-20, article e104975)

Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma

Choi, Jiyeon; Zhang, Tongwu; Vu, Andrew; Ablain, Julien; Makowski, M.M.; Colli, Leandro M.; Grawe, Cathrin; Vermeulen, Michiel ; Zon, Leonard, I; Brown, K.M.

2020, Article / Letter to editor (Nature Communications, vol. 11, iss. 1, (2020), pp. 1-16, article 2718)

Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by the nucleosome remodelling and deacetylation complex

Ragheb, Ramy; Gharbi, Sarah; Cramard, J.; Ogundele, Oluwaseun; Kloet, S.L.; Burgold, Thomas; Vermeulen, Michiel ; Reynolds, Nicola; Hendrich, B.

2020, Article / Letter to editor (Stem Cell Research, vol. 46, (2020), pp. 1-14, article 101867)

RNF43 truncations trapCK1 to drive niche-independent self-renewal in cancer

Spit, Maureen; Fenderico, Nicola; Jordens, Ingrid; Radaszkiewicz, Tomasz; Lindeboom, R.G.H.; Bugter, Jeroen M.; Janssen, E. ; Vermeulen, M. ; Maurice, Madelon M.

2020, Article / Letter to editor (EMBO Journal, vol. 39, iss. 18, (2020), article e103932)

Chromatin proteomics to study epigenetics - challenges and opportunities

Mierlo, G. van; Vermeulen, M.

2020, Article / Letter to editor (Molecular & Cellular Proteomics, (2020))

The rRNA m(6)A methyltransferase METTL5 is involved in pluripotency and developmental programs

Ignatova, Valentina V.; Stolz, Paul; Kaiser, Steffen; Gustafsson, Tobias H.; Lastres, Palma Rico; Sanz-Moreno, Adrian; Vermeulen, Michiel ; Bultmann, Sebastian; Schneider, Robert; Baltissen, M.P.A.

2020, Article / Letter to editor (Genes & Development, vol. 34, iss. 9-10, (2020), pp. 715-729)

The translational landscape of ground state pluripotency

Atlasi, Y.; Jafarnejad, S.M.; Gkogkas, C.G.; Vermeulen, M. ; Sonenberg, N.; Stunnenberg, H.

2020, Article / Letter to editor (Nature Communications, vol. 11, iss. 1, (2020), pp. 1-13, article 1617)

Toward a comprehensive and dynamic conceptual framework to research and enact professional learning communities in secondary education

Meeuwen, P. van; Huijboom, F.; Rusman, E.; Vermeulen, M. ; Imants, J.G.M.

2020, Article / Letter to editor (European Journal of Teacher Education, vol. 43, iss. 4, (2020), pp. 405-427)

Locus-specific chromatin isolation

Vermeulen, M. ; Dejardin, Jerome

2020, Article / Letter to editor (Nature Reviews. Molecular Cell Biology, vol. 21, (2020), pp. 249-250)

Purification and enrichment of specific chromatin loci

Gauchier, Mathilde; Mierlo, G. van; Vermeulen, M. ; Dejardin, Jerome

2020, Article / Letter to editor (Nature Methods, vol. 17, (2020), pp. 1-10)

Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity

Baars, Matthijs J.D.; Douma, Thera; Simeonov, Dimitre R.; Myers, Darienne R.; Kulhanek, Kayla; Banerjee, Saikat; Vermeulen, M. ; Zwakenberg, S.; Baltissen, M.P.A.; Amini, M.; et al.

sine al.

2020, Article / Letter to editor (European Journal of Immunology, vol. 51, (2020), pp. 471-482)

Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons

Rother, N ; Yanginlar, C. ; Lindeboom, R.G.H.; Bekkering, S. ; Leent, M.M.T. van; Buijsers, B. ; Jonkman, Inge ; Graaf, M.J.J. de ; Baltissen, M.; Riksen, N.P. ; et al.

sine al.

2020, Article / Letter to editor (Cell Reports Medicine, vol. 1, iss. 9, (2020), article 100146)

The interactome of a family of potential methyltransferases in HeLa cells

Ignatova, Valentina V.; Jansen, P. W.; Baltissen, M.P.; Vermeulen, Michiel ; Schneider, Robert

2019, Article / Letter to editor (Scientific Reports, vol. 9, (2019), pp. 1-9, article 6584)

The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment

Burgold, Thomas; Barber, Michael; Kloet, S.L.; Cramard, J.; Gharbi, Sarah; Floyd, Robin; Vermeulen, Michiel ; Dietmann, Sabine; Hendrich, B.

2019, Article / Letter to editor (EMBO Journal, vol. 38, iss. 12, (2019), pp. 1-18, article e100788)

Probing the Tumor Suppressor Function of BAP1 in CRISPR-Engineered Human Liver Organoids

Artegiani, Benedetta; Voorthuijsen, L. van; Lindeboom, R.G.H.; Seinstra, Danielle; Heo, Inha; Tapia, Pablo; Peters, P.J. ; Vermeulen, Michiel ; Clevers, Hans

2019, Article / Letter to editor (Cell Stem Cell, vol. 24, iss. 6, (2019), pp. 927-943, e1-e6)

The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA

Pinto, R.; Vågbø, C.B.; Jakobsson, M.E.; Baltissen, M.P.; O'Donohue, M.F.; Malecki, J.M.; Wu, A.; Kirpekar, F.; Olsen, J.V.; Gleizes, P.E.; et al.

sine al.

2019, Article / Letter to editor (Nucleic Acids Research, (2019))

Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements

Furlan, C.; Dirks, R.A.M.; Thomas, Peter C.; Jones, Robert C.; Wang, Jing; Lynch, Mark; Marks, Hendrik ; Vermeulen, Michiel

2019, Article / Letter to editor (Nature Communications, vol. 10, (2019), article 1525)

EZH1/2 function mostly within canonical PRC2 and exhibit proliferation-dependent redundancy that shapes mutational signatures in cancer

Wassef, Michel; Luscan, Armelle; Aflaki, Setareh; Zielinski, Dina; Jansen, P.W.T.C.; Baymaz, H.I.; Vermeulen, Michiel ; Pasmant, Eric; Margueron, R.

2019, Article / Letter to editor (Proceedings of the National Academy of Sciences USA, vol. 116, iss. 13, (2019), pp. 6075-6080)

EZHIP constrains Polycomb Repressive Complex 2 activity in germ cells

Ragazzini, Roberta; Perez-Palacios, Raquel; Baymaz, H.I.; Diop, Seynabou; Ancelin, Katia; Zielinski, Dina; Jansen, P. W.; Vermeulen, Michiel ; Margueron, R.

2019, Article / Letter to editor (Nature Communications, vol. 10, (2019), article 3858)

The Complexity of PRC2 Subcomplexes

van Mierlo, G.; Veenstra, G.J.C. ; Vermeulen, M. ; Marks, H.

2019, Article / Letter to editor (Trends in Cell Biology, vol. 29, iss. 8, (2019), pp. 660-671)

Identifying readers for (hydroxy)methylated DNA using quantitative interaction proteomics: advances and challenges ahead

Sequeira, V.M.; Vermeulen, M.

2019, Article / Letter to editor (Journal of Molecular Biology, (2019))

Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay

Hoek, Tim A.; Khuperkar, Deepak; Lindeboom, R.G.H.; Sonneveld, Stijn; Verhagen, Bram M.P.; Boersma, Sanne; Vermeulen, Michiel ; Tanenbaum, Marvin E.

2019, Article / Letter to editor (Molecular Cell, vol. 75, iss. 2, (2019), pp. 324-+)

BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition

Gaudio, Nunzio Del; Costanzo, Antonella Di; Liu, Ning Qing; Conte, Lidio; Migliaccio, Antimo; Vermeulen, Michiel ; Martens, J.H.A. ; Stunnenberg, H.G. ; Altucci, Lucia

2019, Article / Letter to editor (Cell Death and Disease, vol. 10, (2019), pp. 1-14, article 338)

Quantification of Proteins and Histone Marks in Drosophila Embryos Reveals Stoichiometric Relationships Impacting Chromatin Regulation

Bonnet, Jacques; Lindeboom, R.G.H.; Pokrovsky, Daniil; Stricker, Georg; Celik, Muhammed Hasan; Rupp, Ralph A.W.; Vermeulen, Michiel ; Imhof, Axel; Mueller, J.

2019, Article / Letter to editor (Developmental Cell, vol. 51, iss. 5, (2019), pp. 632-+)

The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy

Lindeboom, R.G.H.; Vermeulen, Michiel ; Lehner, Ben; Supek, Fran

2019, Article / Letter to editor (Nature Genetics, vol. 51, iss. 11, (2019), pp. 1645-+)

High-throughput identification of human SNPs affecting regulatory element activity

Arensbergen, Joris van; Pagie, Ludo; FitzPatrick, Vincent D.; Haas, Marcel de; Baltissen, M.P.A.; Comoglio, Federico; Vermeulen, Michiel ; Bussemaker, Harmen J.; Steensel, Bas van

2019, Article / Letter to editor (Nature Genetics, vol. 51, iss. 7, (2019), pp. 1160-+)

The Pluripotency Regulator PRDM14 Requires Hematopoietic Regulator CBFA2T3 to Initiate Leukemia in Mice

Tracey, Lauren J.; Brooke-Bisschop, Travis; Jansen, P. W.; Campos, Eric, I; Vermeulen, Michiel ; Justice, Monica J.

2019, Article / Letter to editor (Molecular Cancer Research, vol. 17, iss. 7, (2019), pp. 1468-1479)

PRC2.1 and PRC2.2 Synergize to Coordinate H3K27 Trimethylation

Healy, Evan; Mucha, Marlena; Glancy, Eleanor; Fitzpatrick, Darren J.; Conway, Eric; Neikes, Hannah K.; Mierlo, G. van; Vermeulen, Michiel ; Koseki, Haruhiko; Bracken, Adrian P.

2019, Article / Letter to editor (Molecular Cell, vol. 76, iss. 3, (2019), pp. 437-+)

PAQMAN: Protein-nucleic acid affinity quantification by MAss spectrometry in nuclear extracts

Gräwe, C.; Makowski, M.M.; Vermeulen, M.

2019, Article / Letter to editor (Methods: a Journal for Human Science, vol. 184, (2019), pp. 70-77)

Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan

Rougeot, J.J.Y.; Chrispijn, N.D.; Aben, M.; Elurbe, D. ; Andralojc, K.M. ; Murphy, P.J.; Jansen, P.W.T.C.; Vermeulen, M. ; Cairns, B.R.; Kamminga, L.M.

2019, Article / Letter to editor (Development, vol. 146, iss. 19, (2019), article dev178590)

Induction and Suppression of NF-kappa B Signalling by a DNA Virus of Drosophila

Palmer, William H.; Joosten, J. ; Overheul, G.J. ; Jansen, P. W.; Vermeulen, Michiel ; Obbard, Darren J.; Rij, R.P. van

2019, Article / Letter to editor (Journal of Virology, vol. 93, iss. 3, (2019), pp. 1-20, article e01443-18)

CBFβ-MYH11 interferes with megakaryocyte differentiation via modulating a gene program that includes GATA2 and KLF1

Yi, G.; Mandoli, A.; Jussen, L.; Tijchon, E.; Bergen, M.G.J.M. van ; Cordonnier, G.; Hansen, M.; Kim, B.; Nguyen, L.N.; Jansen, P. W.; et al.

sine al.

2019, Article / Letter to editor (Blood Cancer Journal, vol. 9, iss. 3, (2019), pp. 33)

Molecular mechanisms of bleeding disorderassociated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets

Oorschot, R. van ; Hansen, M.; Koornneef, J.M.; Marneth, A.E.; Bergevoet, S.M. ; Bergen, M.G.J.M. van ; Alphen, F.P.J. van; Zwaan, C. de; Martens, J.H.A. ; Vermeulen, M. ; et al.

sine al.

2019, Article / Letter to editor (Haematologica, vol. 104, iss. 7, (2019), pp. 1460-1472)

The Tudor protein Veneno assembles the ping-pong amplification complex that produces viral piRNAs in Aedes mosquitoes

Joosten, J. ; Miesen, P. ; Taskopru, E. ; Pennings, B. ; Jansen, P.W.T.C.; Huynen, M.A. ; Vermeulen, M. ; Rij, R.P. van

2019, Article / Letter to editor (Nucleic Acids Research, vol. 47, iss. 5, (2019), pp. 2546-2559)

Integrative Proteomic Profiling Reveals PRC2-Dependent Epigenetic Crosstalk Maintains Ground-State Pluripotency

Mierlo, G. van; Dirks, R.A.M.; Clerck, Laura De; Brinkman, A.B. ; Huth, Michelle; Kloet, S.L.; Kroeze, L.; Jansen, J.H. ; Vermeulen, Michiel ; Dhaenens, Maarten; et al.

sine al.

2019, Article / Letter to editor (Cell Stem Cell, vol. 24, iss. 1, (2019), pp. 123-137, e1-e8)

TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A

Pines, Alex; Dijk, Madelon; Makowski, M.M.; Meulenbroek, Elisabeth M.; Vrouwe, Mischa G.; Weegen, Yana van der; Vermeulen, Michiel ; Pannu, Navraj S.; Attikum, Haico van

2018, Article / Letter to editor (Nature Communications, vol. 9, (2018), pp. 1-14, article 1040)

Integrative multi-omics analysis of intestinal organoid differentiation

Lindeboom, R.G.H.; Voorthuijsen, L. van; Oost, Koen C.; Rodriguez-Colman, Maria J.; Luna-Velez, Maria V.; Furlan, C.; Snippert, Hugo J.G.; Vermeulen, Michiel

2018, Article / Letter to editor (Molecular Systems Biology, vol. 14, iss. 6, (2018), pp. 1-16, article e8227)

Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry

Makowski, M.M.; Gräwe, C.; Foster, Benjamin M.; Nguyen, Nhuong V.; Bartke, Till; Vermeulen, Michiel

2018, Article / Letter to editor (Nature Communications, vol. 9, (2018), pp. 1-10, article 1653)

Targeted degradation of BRD9 reverses oncogenic gene expression in synovial sarcoma

Brien, Gerard L.; Remillard, David; Shi, Junwei; Hemming, Matthew L.; Chabon, Jonathon; Wynne, Kieran; Mierlo, G. van; Vermeulen, Michiel ; Vakoc, Christopher R.; Armstrong, Scott A.

2018, Article / Letter to editor (Elife, vol. 7, (2018), pp. 1-26, article e41305)

Specific Labeling of Stem Cell Activity in Human Colorectal Organoids Using an ASCL2-Responsive Minigene

Oost, Koen C.; Voorthuijsen, L. van; Fumagalli, Arianna; Lindeboom, R.G.H.; Sprangers, Joep; Omerzu, Manja; Vermeulen, Michiel ; Snippert, Hugo J.G.

2018, Article / Letter to editor (Cell Reports, vol. 22, iss. 6, (2018), pp. 1600-1614)

Erratum to: Proteomic landscape of the primary somatosensory cortex upon sensory deprivation.

Kole, K. ; Lindeboom, R.G.H.; Baltissen, M.P.; Jansen, P. W.; Vermeulen, M. ; Tiesinga, P.H.E.; Celikel, T.

2018, Article / Letter to editor (Gigascience, vol. 7, iss. 7, (2018), pp. 1)

ZBTB2 reads unmethylated CpG island promoters and regulates embryonic stem cell differentiation

Karemaker, I.D. ; Vermeulen, Michiel

2018, Article / Letter to editor (EMBO Reports, vol. 19, iss. 4, (2018), pp. 1-11, article UNSP e44993)

Single-Cell DNA Methylation Profiling: Technologies and Biological Applications

Karemaker, I.D. ; Vermeulen, M.

2018, Article / Letter to editor (Trends in Biotechnology, vol. 36, iss. 9, (2018), pp. 952-965)

NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells

Kloet, S.L.; Karemaker, I.D. ; Voorthuijsen, L. van; Lindeboom, R.G.H.; Baltissen, Marijke P.; Edupuganti, Raghu R.; Jansen, P.W.T.C.; Vermeulen, Michiel

2018, Article / Letter to editor (Nature Communications, vol. 9, (2018), pp. 1-11, article 4588)

The HDAC inhibitor SAHA regulates CBX2 stability via a SUMO-triggered ubiquitin-mediated pathway in leukemia

Costanzo, Antonella Di; Gaudio, Nunzio Del; Conte, Lidio; Dell'Aversana, Carmela; Vermeulen, Michiel ; The, Hugues de; Nebbioso, Angela ; Altucci, Lucia

2018, Article / Letter to editor (Oncogene, vol. 37, iss. 19, (2018), pp. 2559-2572)

Mass Spectrometry-Based Absolute Quantification of Single Xenopus Embryo Proteomes

Lindeboom, R.G.H.; Smits, A.H. ; Perino, M.; Veenstra, Gert Jan C. ; Vermeulen, M.

2018, Article / Letter to editor (Cold Spring Harbor Protocols, (2018))

Splicing and Chromatin Factors Jointly Regulate Epidermal Differentiation

Tanis, S.E.J.; Jansen, P. W.; Zhou, H. ; Heeringen, S.J. van ; Vermeulen, Michiel ; Kretz, Markus; Mulder, Klaas W.

2018, Article / Letter to editor (Cell Reports, vol. 25, iss. 5, (2018), pp. 1292-1303.e5)

Proteome-wide identification of ubiquitin interactions using UbIA-MS

Zhang, X.; Smits, A.H. ; Tilburg, Gabrielle B.A. van; Ovaa, H.; Huber, Wolfgang; Vermeulen, Michiel

2018, Article / Letter to editor (Nature Protocols, vol. 13, iss. 3, (2018), pp. 530-550)

MTF2 recruits Polycomb Repressive Complex 2 by helical-shape-selective DNA binding

Perino, M.; Mierlo, G. van; Karemaker, I.D. ; Genesen, Siebe van ; Vermeulen, Michiel ; Marks, Hendrik ; Heeringen, S.J. van ; Veenstra, Gert Jan C.

2018, Article / Letter to editor (Nature Genetics, vol. 50, iss. 7, (2018), pp. 1002-1016)

Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells

Buggenum, A.G.L. van ; Gerlach, J.P.; Tanis, S.E.J.; Hogeweg, M.; Jansen, P.W.T.C.; Middelwijk, Jesse; Vermeulen, M. ; Stunnenberg, H.G. ; Albers, C.A. ; Mulder, K.W.

2018, Article / Letter to editor (Nature Communications, vol. 9, (2018), article 2384)

Radboud Repository

Browsing by Author "Vermeulen, M."

Search Repository

Browse

All of Repository