Browsing by Author "Oomens, J."

Now showing items 1-50 of 227

Influence of the local environment on the intrinsic structures of gas-phase cytidine-5 '-monophosphates
Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2020, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 447, (2020), article 116234)
Infrared ion spectroscopy: New opportunities for small-molecule identification in mass spectrometry - A tutorial perspective
Martens, Jonathan; Outersterp, Rianne E. van ; Vreeken, R.J.; Cuyckens, F.; Coene, K.L.M. ; Engelke, U.F. ; Kluijtmans, L.A.J. ; Wevers, R.A. ; Buydens, Lutgarde M.C. ; Redlich, Britta ; Berden, Giel ; Oomens, J. et al. sine al.
2020, Article / Letter to editor (Analytica Chimica Acta, vol. 1093, (2020), pp. 1-15)
Photolysis-induced scrambling of PAHs as a mechanism for deuterium storage
Wiersma, Sandra D.; Candian, Alessandra; Bakker, Joost M. ; Martens, Jonathan; Berden, Giel ; Oomens, J. ; Buma, Wybren Jan; Petrignani, Annemieke
2020, Article / Letter to editor (Astronomy & Astrophysics, vol. 635, (2020), article A9)
The infrared spectrum of protonated buckminsterfullerene C60H+
Palotas, Julianna; Martens, Jonathan; Berden, Giel ; Oomens, J.
2020, Article / Letter to editor (Nature Astronomy, vol. 4, iss. 3, (2020), pp. 240-245)
Unravelling the Keto-Enol Tautomer Dependent Photochemistry and Degradation Pathways of the Protonated UVA Filter Avobenzone
Berenbeim, Jacob A.; Wong, Natalie G.K.; Cockett, Martin C.R.; Berden, G. ; Oomens, J. ; Rijs, Anouk M.; Dessent, Caroline
2020, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 124, iss. 15, (2020), pp. 2919-2930)
Vibrational Spectra of the Ruthenium-Tris-Bipyridine Dication and Its Reduced Form in Vacuo
Munshi, M.U.; Martens, Jonathan; Berden, Giel ; Oomens, J.
2020, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 124, iss. 12, (2020), pp. 2449-2459)
Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations
Piatkivskyi, A.; Lau, J.K.C.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.; Ryzhov, V.
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 112-121)
A Cl- Hinge for Cyclen Macrocycles: Ionic Interactions and Tweezer-Like Complexes
Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.
2019, Article / Letter to editor (Frontiers in Chemistry, vol. 7, (2019), pp. 1-9, article 143)
Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs
Munshi, M.U.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.
2019, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 123, iss. 19, (2019), pp. 4149-4157)
Protoisomerization of Indigo and Isoindigo Dyes Confirmed by Gas-Phase Infrared Ion Spectroscopy
Munshi, M.U.; Martens, J.K.; Berden, G. ; Oomens, J.
2019, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 123, iss. 38, (2019), pp. 8226-8233)
Gas-phase structures of protonated arabino nucleosides
Hamlow, L.A.; He, C.C.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Soley, Erik O.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 438, (2019), pp. 124-134)
Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde
Perez, Evan; Corcovilos, T.A.; Gibson, J.K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 58-72)
Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+
Owen, Cameron J.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 97-111)
Insights into the Recognition of Phosphate Groups by Peptidic Arginine from Action Spectroscopy and Quantum Chemical Computations
Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.
2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 35, (2019), pp. 7528-7535)
Impact of the 2-and 3-Sugar Hydroxyl Moieties on Gas-Phase Nucleoside Structure
Hamlow, L.A.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 5, (2019), pp. 832-845)
Influence of 2'-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides
Devereaux, Zachary J.; Roy, H.A.; He, C.C.; Zhu, Y.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of Fluorine Chemistry, vol. 219, (2019), pp. 10-22)
Impact of Sodium Cationization on Gas-Phase Conformations of DNA and RNA Cytidine Mononucleotides
Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1758-1767)
Spectroscopic Evidence for Lactam Formation in Terminal Ornithine b(2)(+) and b(3)(+) Fragment Ions
Smith, Zachary M.; Wang, Xiye; Scheerer, Jonathan R.; Martens, J.K.; Berden, G. ; Oomens, J. ; Wysocki, V.; Poutsma, J.C.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1565-1577)
The Glycosylation Mechanisms of 6,3-Uronic Acid Lactones
Elferink, Hidde; Mensink, R.A.; Castelijns, Wilke W.A.; Jansen, Oscar; Bruekers, J.P.J.; Martens, J.K.; Oomens, J. ; Rijs, Anouk M.; Boltje, T.J.
2019, Article / Letter to editor (Angewandte Chemie. International Edition, vol. 58, iss. 26, (2019), pp. 8746-8751)
The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy
Cazaux, Stephanie; Arribard, Yann; Egorov, Dmitrii; Palotas, Julianna; Hoekstra, Ronnie; Berden, G. ; Oomens, J. ; Schlatholter, Thomas
2019, Article / Letter to editor (The Astrophysical Journal, vol. 875, iss. 1, (2019), pp. 1-8, article 27)
Characterization of protonated AcAlaDab and AcDabAla by IRMPD spectroscopy and molecular modeling
Batoon, Patrick; Zhang, Yuntao; Berden, G. ; Oomens, J. ; Ren, Jianhua
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 444, (2019), article UNSP 116178)
Gas-phase vibrations of the anionic, hydrogen-bonded dimer of 9-methylguanine
Switzer, Christopher; Martens, J.K.; Kempkes, L.J.M.; Berden, G. ; Oomens, J. ; Morton, T.H.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 446, (2019), article UNSP 116211)
Measurement of the asymmetric UO22+ stretching frequency for [(UO2)-O-VI(F)(3)](-) using IRMPD spectroscopy
Tatosian, Irena; Metzler, Luke; Graca, Connor; Bubas, Amanda; Corcovilos, T.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 446, (2019), article UNSP 116231)
The infrared spectrum of protonated buckminsterfullerene C60H+
Palotás, J.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.
2019, Article / Letter to editor (Nature Astronomy, (2019))
Infrared Ion Spectroscopy of Environmental Organic Mixtures: Probing the Composition of alpha-Pinene Secondary Organic Aerosol
Walhout, Emma Q.; Dorn, Shelby E.; Martens, J.K.; Berden, G. ; Oomens, J. ; Cheong, Paul H.-Y.; Kroll, Jesse H.; O'Brien, Rachel E.
2019, Article / Letter to editor (Environmental Science and Technology, vol. 53, iss. 13, (2019), pp. 7604-7612)
Investigation of the position of the radical in z(3)-ions resulting from electron transfer dissociation using infrared ion spectroscopy
Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Houthuijs, Kas J.; Oomens, J.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, (2019), pp. 434-452)
Structures and Relative Glycosidic Bond Stabilities of Protonated 2 '-Fluoro-Substituted Purine Nucleosides
Devereaux, Zachary J.; He, C.C.; Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 8, (2019), pp. 1521-1536)
Pushing resolution in frequency and time: general discussion
Simons, Jack; Johnson, M.H.; Asmis, Knut; McCoy, Anne B.; Daly, Steven; Wester, Roland; Rijs, A.M.; Sarre, Peter; Gaigeot, Marie-Pierre; Mabbs, Richard; Jordan, Kenneth; Dessent, Caroline; Neumark, Daniel; Chou, Chin-wen; Gerber, Benny; Dopfer, Otto; Oomens, J. ; Krylov, Anna; Schlemmer, Stephan; Willitsch, Stefan; Verlet, Jan; Wild, Robert; Gatchell, Michael; Stockett, Mark; Roithova, J.; Beyer, Martin K.; Xantheas, Sotiris; Gibbard, Jemma; Dohnal, Petr et al. sine al.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 290-321)
Controlling internal degrees: general discussion
Ahmed, Musahid; Asmis, Knut; Avdonin, Ivan; Beyer, Martin K.; Bieske, Evan; Bougueroua, Sana; Chou, Chin-wen; Daly, Steven; Dopfer, Otto; Ellis-Gibbings, Lilian; Gabelica, Valérie; Gaigeot, Marie-Pierre; Gatchell, Michael; Gerber, Benny; Johnson, Christopher; Johnson, M.H.; Jordan, Kenneth; Krylov, Anna; Mayer, Martin; McCaslin, Laura; McCoy, Anne B.; Neumark, Daniel; Ončák, Milan; Oomens, J. ; Rijs, A.M.; Rizzo, Thomas; Roithová, Jana; Sarre, Peter; Schlemmer, Stephan; Simons, Jack; Stockett, Mark; Trevitt, Adam; Verlet, Jan; Wang, Xue-Bin; Wester, Roland; Willitsch, Stefan; Xantheas, Sotiris et al. sine al.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 138-171)
Going large(r): general discussion
Ahmed, Musahid; Daly, Steven; Dessent, Caroline; Dopfer, Otto; Gabelica, Valérie; Gaigeot, Marie-Pierre; Gatchell, Michael; Gerber, Benny; Gibbard, Jemma; Johnson, Christopher; Johnson, M.H.; Jordan, Kenneth; Krylov, Anna; Lovelock, Kevin; Mayer, Martin; McCaslin, Laura; McCoy, Anne B.; Neumark, Daniel; Nielsen, Steen Brøndsted; Oomens, J. ; Rijs, A.M.; Rizzo, Thomas; Roithová, Jana; Simons, Jack; Stockett, Mark; Trevitt, Adam; Verlet, Jan; Wang, Xue-Bin; Wester, Roland; Xantheas, Sotiris et al. sine al.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 476-513)
Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes
Boles, G.C.; Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 64-82)
Ionic Pd/NHC Catalytic System Enables Recoverable Homogeneous Catalysis: Mechanistic Study and Application in the Mizoroki–Heck Reaction
Eremin, Dmitry B.; Denisova, Ekaterina A.; Yu. Kostyukovich, Alexander; Martens, J.K.; Berden, W.C.M. ; Oomens, J. ; Khrustalev, Victor N.; Chernyshev, Victor M.; Ananikov, Valentine P.
2019, Article / Letter to editor (Chemistry : a European Journal, vol. 25, iss. 72, (2019), pp. 16564-16572)
IRMPD action spectroscopy, ER-CID experiments, and theoretical approaches investigate intrinsic L-thymidine properties compared to D-thymidine: Findings support robust methodology
Soley, Erik O.; Devereaux, Zachary J.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 441, (2019), pp. 32-43)
Gas-phase metal ion chelation investigated with IRMPD spectroscopy: A brief review of Robert Dunbar’s contributions
Oomens, J. ; Polfer, N.C.; Berden, W.C.M. ; Eyler, J.R.
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 86-96)
Structures of [GPGG + H - H2O](+) and [GPGG + H - H2O - NH=CH2](+) ions; evidence of rearrangement prior to dissociation
Lau, J.K.C.; Lai, Cheuk-Kuen; Lam, K.H.Brian; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 51-57)
Zinc and Cadmium Complexation of L-Threonine: An Infrared Multiple Photon Dissociation Spectroscopy and Theoretical Study
Boles, G.C.; Hightower, Randy L.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 44, (2019), pp. 9343-9354)
Reference-standard free metabolite identification using infrared ion spectroscopy
Outersterp, Rianne E. van ; Houthuijs, K.J.; Berden, Giel ; Engelke, U.F. ; Kluijtmans, L.A.J. ; Wevers, R.A. ; Coene, K.L.M. ; Oomens, J. ; Martens, Jonathan
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 443, (2019), pp. 77-85)
Hydrogen tunneling avoided: enol-formation from a charge-tagged phenyl pyruvic acid derivative evidenced by tandem-MS, IR ion spectroscopy and theory
Paul, Mathias; Peckelsen, Katrin; Thomulka, Thomas; Neudoerfl, Joerg; Martens, Jonathan; Berden, Giel ; Oomens, J. ; Meijer, Anthony J.H.M.; Schaefer, Mathias
2019, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 21, iss. 30, (2019), pp. 16591-16600)
An automatic variable laser attenuator for IRMPD spectroscopy and analysis of power-dependence in fragmentation spectra
Berden, Giel ; Derksen, M. ; Houthuijs, Kas J.; Martens, Jonathan; Oomens, J.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 443, (2019), pp. 1-8)
The FELion cryogenic ion trap beam line at the FELIX free-electron laser laboratory: infrared signatures of primary alcohol cations
Jusko, Pavol; Brünken, Sandra; Asvany, Oskar; Thorwirth, Sven; Stoffels, A.B.; Meer, Lex van der; Berden, Giel ; Redlich, B. ; Oomens, J. ; Schlemmer, Stephan
2019, Article / Letter to editor (Faraday Discussions, vol. 217, (2019), pp. 172-202)
Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study
Kempkes, L.J.M.; Boles, G.C.; Martens, J.K.; Berden, G. ; Armentrout, P.B.; Oomens, J.
2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 9, (2018), pp. 2424-2436)
Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane
Bouwman, J.; Horst, Stefan; Oomens, J.
2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 23, (2018), pp. 3211-3218)
Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Aspartic Acid Complexes with Zn2+ and Cd2+
Boles, G.C.; Hightower, Randy L.; Coates, R.A.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 14, (2018), pp. 3836-3853)
Unimolecular Fragmentation of Deprotonated Diproline [Pro(2)-H](-) Studied by Chemical Dynamics Simulations and IRMPD Spectroscopy
Martin-Somer, Ana; Martens, J.K.; Grzetic, J.; Hase, William L.; Oomens, J. ; Spezia, R.
2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 10, (2018), pp. 2612-2625)
w-Type ions formed by electron transfer dissociation of Cys-containing peptides investigated by infrared ion spectroscopy
Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.
2018, Article / Letter to editor (Journal of Mass Spectrometry, vol. 53, iss. 12, (2018), pp. 1207-1213)
Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase?
Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.
2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 25, (2018), pp. 5589-5596)
Conformations of Protonated AlaDap and DapAla Characterized by IRMPD Spectroscopy and Molecular Modeling
Batoon, Patrick; Oomens, J. ; Berden, G. ; Ren, Jianhua
2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 8, (2018), pp. 2191-2202)
Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers
Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.
2018, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 9, iss. 22, (2018), pp. 6404-6411)
Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation
Jian, Jiwen; Hu, Shu-Xian; Li, Wan-Lu; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J. ; Li, Jun; Gibson, J.K.
2018, Article / Letter to editor (Inorganic Chemistry, vol. 57, iss. 7, (2018), pp. 4125-4134)
Structural Investigation of the Hormone Melatonin and Its Alkali and Alkaline Earth Metal Complexes in the Gas Phase
Chakrabarty, Satrajit; DiTucci, Matthew J.; Berden, G. ; Oomens, J. ; Williams, E.R.
2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 9, (2018), pp. 1835-1847)

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