Browsing by Author "Oomens, J."

Gas-phase structures of protonated arabino nucleosides

Hamlow, L.A.; He, C.C.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Soley, Erik O.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 438, (2019), pp. 124-134)

Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations

Piatkivskyi, A.; Lau, J.K.C.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.; Ryzhov, V.

2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 112-121)

Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde

Perez, Evan; Corcovilos, T.A.; Gibson, J.K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van

2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 58-72)

Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+

Owen, Cameron J.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 97-111)

Influence of 2'-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides

Devereaux, Zachary J.; Roy, H.A.; He, C.C.; Zhu, Y.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2019, Article / Letter to editor (Journal of Fluorine Chemistry, vol. 219, (2019), pp. 10-22)

A Cl- Hinge for Cyclen Macrocycles: Ionic Interactions and Tweezer-Like Complexes

Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2019, Article / Letter to editor (Frontiers in Chemistry, vol. 7, (2019), pp. 1-9, article 143)

The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy

Cazaux, Stephanie; Arribard, Yann; Egorov, Dmitrii; Palotas, Julianna; Hoekstra, Ronnie; Berden, G. ; Oomens, J. ; Schlatholter, Thomas

2019, Article / Letter to editor (The Astrophysical Journal, vol. 875, iss. 1, (2019), pp. 1-8, article 27)

Impact of the 2-and 3-Sugar Hydroxyl Moieties on Gas-Phase Nucleoside Structure

Hamlow, L.A.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 5, (2019), pp. 832-845)

Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs

Munshi, M.U.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.

2019, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 123, iss. 19, (2019), pp. 4149-4157)

Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes

Boles, G.C.; Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 64-82)

Structures of [GPGG + H - H2O](+) and [GPGG + H - H2O - NH=CH2](+) ions; evidence of rearrangement prior to dissociation

Lau, J.K.C.; Lai, Cheuk-Kuen; Lam, K.H.Brian; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.

2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 51-57)

Guanidinium/ammonium competition and proton transfer in the interaction of the amino acid arginine with the tetracarboxylic 18-crown-6 ionophore

Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 6, (2018), pp. 4067-4073)

Equatorial coordination of uranyl: Correlating ligand charge donation with the O-yl-U-O-yl asymmetric stretch frequency

Gibson, J.K.; Jong, Wibe A. de; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Organometallic Chemistry, vol. 857, (2018), pp. 94-100)

Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study

Kempkes, L.J.M.; Boles, G.C.; Martens, J.K.; Berden, G. ; Armentrout, P.B.; Oomens, J.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 9, (2018), pp. 2424-2436)

Intra-cavity proton bonding and anharmonicity in the anionophore cyclen

Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 13, (2018), pp. 8968-8975)

Loss of water from protonated polyglycines: interconversion and dissociation of the product imidazolone ions

Lam, K.H.Brian; Lau, J.K.C.; Lai, Cheuk-Kuen; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 27, (2018), pp. 18688-18698)

Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane

Bouwman, J.; Horst, Stefan; Oomens, J.

2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 23, (2018), pp. 3211-3218)

Complexes of Crown Ether Macrocycles with Methyl Guanidinium: Insights into the Capture of Charge in Peptides

Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 17, (2018), pp. 2169-2175)

Experimental and theoretical investigations of infrared multiple photon dissociation spectra of arginine complexes with Zn2+ and Cd2+

Chalifoux, Aaron M.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 31, (2018), pp. 20712-20725)

Infrared multiple photon dissociation spectroscopy of cationized canavanine: Side-chain substitution influences gas-phase zwitterion formation

Smith, Zachary M.; Steinmetz, V.; Martens, J.K.; Oomens, J. ; Poutsma, J.C.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 158-173)

An Unprecedented Retro-Mumm Rearrangement Revealed by ESI-MS/MS, IRMPD Spectroscopy, and DFT Calculations

Iacobucci, Claudio; Reale, Samantha; Aschi, Massimiliano; Oomens, J. ; Berden, G. ; Angelis, Francesco De

2018, Article / Letter to editor (Chemistry : a European Journal, vol. 24, iss. 27, (2018), pp. 7026-7032)

Gas phase vibrations of an anionic, hydrogen-bonded homodimer of a nucleobase analogue: Isocytosino-8-trifluoromethylquinolone

Bendo, J.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Morton, T.H.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 206-211)

Transition metal(II) complexes of histidine-containing tripeptides: Structures, and infrared spectroscopy by IRMPD

Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 198-205)

Conformations and N-glycosidic bond stabilities of sodium cationized 2-deoxycytidine and cytidine: Solution conformation of [Cyd + Na](+) is preserved upon ESI

Zhu, Y.; Hamlow, L.A.; He, C.C.; Roy, H.A.; Cunningham, N.A.; Munshi, M.U.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 18-27)

Competition between salt bridge and non-zwitterionic structures in deprotonated amino acid dimers

Heiles, S.; Berden, G. ; Oomens, J. ; Williams, E.R.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 23, (2018), pp. 15641-15652)

Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Aspartic Acid Complexes with Zn2+ and Cd2+

Boles, G.C.; Hightower, Randy L.; Coates, R.A.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 14, (2018), pp. 3836-3853)

Unimolecular Fragmentation of Deprotonated Diproline [Pro(2)-H](-) Studied by Chemical Dynamics Simulations and IRMPD Spectroscopy

Martin-Somer, Ana; Martens, J.K.; Grzetic, J.; Hase, William L.; Oomens, J. ; Spezia, R.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 10, (2018), pp. 2612-2625)

w-Type ions formed by electron transfer dissociation of Cys-containing peptides investigated by infrared ion spectroscopy

Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Mass Spectrometry, vol. 53, iss. 12, (2018), pp. 1207-1213)

Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase?

Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 25, (2018), pp. 5589-5596)

Conformations of Protonated AlaDap and DapAla Characterized by IRMPD Spectroscopy and Molecular Modeling

Batoon, Patrick; Oomens, J. ; Berden, G. ; Ren, Jianhua

2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 8, (2018), pp. 2191-2202)

Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers

Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 9, iss. 22, (2018), pp. 6404-6411)

Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation

Jian, Jiwen; Hu, Shu-Xian; Li, Wan-Lu; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J. ; Li, Jun; Gibson, J.K.

2018, Article / Letter to editor (Inorganic Chemistry, vol. 57, iss. 7, (2018), pp. 4125-4134)

Structural Investigation of the Hormone Melatonin and Its Alkali and Alkaline Earth Metal Complexes in the Gas Phase

Chakrabarty, Satrajit; DiTucci, Matthew J.; Berden, G. ; Oomens, J. ; Williams, E.R.

2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 9, (2018), pp. 1835-1847)

Modified Quadrupole Ion Trap Mass Spectrometer for Infrared Ion Spectroscopy: Application to Protonated Thiated Uridines

Hamlow, L.A.; Zhu, Y.; Devereaux, Zachary J.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 11, (2018), pp. 2125-2137)

Inverse Sandwich Cyclopentadienyl Complexes of Sodium in the Gas Phase

Featherstone, Joshua; Chong, Tom; Martens, J.K.; Oomens, J. ; McMahon, Terrance B.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 43, (2018), pp. 8659-8664)

Preferential host-guest coordination of nonactin with ammonium and hydroxylammonium

Martínez–Haya, Bruno; Avilés–Moreno, Juan Ramón; Gámez, Francisco; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Chemical Physics, vol. 149, iss. 22, (2018), pp. 1-7, article 225101)

High-resolution IR absorption spectroscopy of polycyclic aromatic hydrocarbons in the 3 mu m region: role of hydrogenation and alkylation

Maltseva, E.; Mackie, C.J.; Candian, A.; Petrignani, Annemieke ; Huang, X.; Lee, Timothy J.; Oomens, J. ; Buma, Wybren Jan

2018, Article / Letter to editor (Astronomy & Astrophysics, vol. 610, (2018), pp. 1-9, article A65)

Structural characterization of nucleotide 5-triphosphates by infrared ion spectroscopy and theoretical studies

Outersterp, R.E. van ; Martens, J.K.; Berden, G. ; Steill, J.D.; Oomens, J. ; Rijs, A.M.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 44, (2018), pp. 28319-28330)

Dehydration reactions of protonated dipeptides containing asparagine or glutamine investigated by infrared ion spectroscopy

Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 90-100)

Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy

Martens, J.K.; Berden, G. ; Bentlage, Herman; Coene, K.L.M. ; Engelke, U.F. ; Wishart, D.; Scherpenzeel, M. van; Kluijtmans, L.A. ; Wevers, R.A. ; Oomens, J.

2018, Article / Letter to editor (Journal of Inherited Metabolic Disease, vol. 41, iss. 3, (2018), pp. 367-377)

Direct Experimental Characterization of Glycosyl Cations by Infrared Ion Spectroscopy

Elferink, Hidde; Severijnen, M.E.; Martens, J.K.; Mensink, R.A.; Berden, G. ; Oomens, J. ; Rutjes, Floris P.J.T. ; Rijs, A.M.; Boltje, T.J.

2018, Article / Letter to editor (Journal of the American Chemical Society, vol. 140, iss. 19, (2018), pp. 6034-6038)

Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Glutamine Complexes with Zn2+ and Cd2+

Boles, G.C.; Coates, R.A.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 35, (2017), pp. 12394-12406)

Gas-phase Conformations and N-Glycosidic Bond Stabilities of Sodium Cationized 2′-Deoxyguanosine and Guanosine: Sodium Cations Preferentially Bind to the Guanine Residue

Zhu, Y.; Hamlow, L.A.; He, C.; Lee, J.K.; Gao, J.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, (2017), pp. 1-41)

Revealing disparate chemistries of protactinium and uranium. Synthesis of the molecular uranium tetroxide anion, UO4–

de Jong, W.A.; Dau, P.D.; Wilson, R.E.; Marçalo, J.; Van Stipdonk, M.J.; Corcovilos, T.A.; Berden, G. ; Martens, J.K.; Oomens, J. ; Gibson, J.K.

2017, Article / Letter to editor (Inorganic Chemistry, vol. 56, iss. 6, (2017), pp. 3686-3694)

Combined liquid chromatography-infrared ion spectroscopy for identification of regioisomeric drug metabolites

Martens, Jonathan; Koppen, V.; Berden, G. ; Cuyckens, F.; Oomens, J.

2017, Article / Letter to editor (Analytical Chemistry, vol. 89, iss. 8, (2017), pp. 4359-4362)

Preparation of labile Ni+(cyclam) cations in the gas phase using electron-transfer reduction through ion–ion recombination in an ion trap and structural characterization with vibrational spectroscopy

Munshi, M.U.; Craig, S.M.; Berden, G. ; Martens, J.K.; DeBlase, A.F.; Foreman, D.J.; McLuckey, S.A.; Oomens, J. ; Johnson, M.A.

2017, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 8, iss. 20, (2017), pp. 5047-5052)

Gas-phase complexes of Ni2+ and Ca2+ with deprotonated histidylhistidine (HisHis): A model case for polyhistidyl-metal binding motifs

Peckelsen, K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Dunbar, R.C.; Meijer, A.J.H.M.; Schäfer, M.

2017, Article / Letter to editor (Journal of Molecular Spectroscopy, vol. 332, (2017), pp. 38-44)

Intramolecular proton transfer from one ether oxygen to another

Oomens, J. ; Berden, G. ; Martens, J.K.; Morton, T.H.

2017, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 418, (2017), pp. 188-192)

Low-Frequency CH Stretch Vibrations of Free Alkoxide Ions

Oomens, J. ; Berden, G. ; Morton, T.H.

2017, Article / Letter to editor (Angewandte Chemie, vol. 129, iss. 1, (2017), pp. 223-226)

The anharmonic quartic force field infrared spectra of hydrogenated and methylated PAHs

Huang, X.; Petrignani, A. ; Oomens, J. ; Buma, W.J.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, (2017), pp. 1-9)

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