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Browsing by Author "Oomens, J."
Now showing items 1-50 of 218
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Influence of the local environment on the intrinsic structures of gas-phase cytidine-5 '-monophosphates<bold> </bold> Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2020, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 447, (2020), article 116234) -
Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations Piatkivskyi, A.; Lau, J.K.C.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.; Ryzhov, V.2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 112-121)
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Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde Perez, Evan; Corcovilos, T.A.; Gibson, J.K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 58-72)
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A Cl- Hinge for Cyclen Macrocycles: Ionic Interactions and Tweezer-Like Complexes Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2019, Article / Letter to editor (Frontiers in Chemistry, vol. 7, (2019), pp. 1-9, article 143) -
Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs Munshi, M.U.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.2019, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 123, iss. 19, (2019), pp. 4149-4157)
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Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes Boles, G.C.; Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 64-82)
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Structures of [GPGG + H - H2O](+) and [GPGG + H - H2O - NH=CH2](+) ions; evidence of rearrangement prior to dissociation Lau, J.K.C.; Lai, Cheuk-Kuen; Lam, K.H.Brian; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 51-57)
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Investigation of the position of the radical in z(3)-ions resulting from electron transfer dissociation using infrared ion spectroscopy Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Houthuijs, Kas J.; Oomens, J.2019, Article / Letter to editor (Faraday Discussions, vol. 217, (2019), pp. 434-452)
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Protoisomerization of Indigo and Isoindigo Dyes Confirmed by Gas-Phase Infrared Ion Spectroscopy Munshi, M.U.; Martens, J.K.; Berden, G. ; Oomens, J.2019, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 123, iss. 38, (2019), pp. 8226-8233)
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Gas-phase metal ion chelation investigated with IRMPD spectroscopy: A brief review of Robert Dunbar’s contributions Oomens, J. ; Polfer, N.C.; Berden, W.C.M. ; Eyler, J.R.2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 86-96)
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Controlling internal degrees: general discussion Ahmed, Musahid; Asmis, Knut; Avdonin, Ivan; Beyer, Martin K.; Bieske, Evan; Bougueroua, Sana; Chou, Chin-wen; Daly, Steven; Dopfer, Otto; Ellis-Gibbings, Lilian; Gabelica, Valérie; Gaigeot, Marie-Pierre; Gatchell, Michael; Gerber, Benny; Johnson, Christopher; Johnson, M.H.; Jordan, Kenneth; Krylov, Anna; Mayer, Martin; McCaslin, Laura; McCoy, Anne B.; Neumark, Daniel; Ončák, Milan; Oomens, J. ; Rijs, A.M.; Rizzo, Thomas; Roithová, Jana; Sarre, Peter; Schlemmer, Stephan; Simons, Jack; Stockett, Mark; Trevitt, Adam; Verlet, Jan; Wang, Xue-Bin; Wester, Roland; Willitsch, Stefan; Xantheas, Sotiris et al.2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 138-171)
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Going large(r): general discussion Ahmed, Musahid; Daly, Steven; Dessent, Caroline; Dopfer, Otto; Gabelica, Valérie; Gaigeot, Marie-Pierre; Gatchell, Michael; Gerber, Benny; Gibbard, Jemma; Johnson, Christopher; Johnson, M.H.; Jordan, Kenneth; Krylov, Anna; Lovelock, Kevin; Mayer, Martin; McCaslin, Laura; McCoy, Anne B.; Neumark, Daniel; Nielsen, Steen Brøndsted; Oomens, J. ; Rijs, A.M.; Rizzo, Thomas; Roithová, Jana; Simons, Jack; Stockett, Mark; Trevitt, Adam; Verlet, Jan; Wang, Xue-Bin; Wester, Roland; Xantheas, Sotiris et al.2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 476-513)
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Pushing resolution in frequency and time: general discussion Simons, Jack; Johnson, M.H.; Asmis, Knut; McCoy, Anne B.; Daly, Steven; Wester, Roland; Rijs, A.M.; Sarre, Peter; Gaigeot, Marie-Pierre; Mabbs, Richard; Jordan, Kenneth; Dessent, Caroline; Neumark, Daniel; Chou, Chin-wen; Gerber, Benny; Dopfer, Otto; Oomens, J. ; Krylov, Anna; Schlemmer, Stephan; Willitsch, Stefan; Verlet, Jan; Wild, Robert; Gatchell, Michael; Stockett, Mark; Roithova, J.; Beyer, Martin K.; Xantheas, Sotiris; Gibbard, Jemma; Dohnal, Petr et al.2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 290-321)
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Gas-phase structures of protonated arabino nucleosides Hamlow, L.A.; He, C.C.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Soley, Erik O.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 438, (2019), pp. 124-134) -
Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+ Owen, Cameron J.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 97-111)
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Influence of 2'-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides Devereaux, Zachary J.; Roy, H.A.; He, C.C.; Zhu, Y.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of Fluorine Chemistry, vol. 219, (2019), pp. 10-22)
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Impact of the 2-and 3-Sugar Hydroxyl Moieties on Gas-Phase Nucleoside Structure Hamlow, L.A.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 5, (2019), pp. 832-845)
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The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy Cazaux, Stephanie; Arribard, Yann; Egorov, Dmitrii; Palotas, Julianna; Hoekstra, Ronnie; Berden, G. ; Oomens, J. ; Schlatholter, Thomas2019, Article / Letter to editor (The Astrophysical Journal, vol. 875, iss. 1, (2019), pp. 1-8, article 27)
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Impact of Sodium Cationization on Gas-Phase Conformations of DNA and RNA Cytidine Mononucleotides Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1758-1767)
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IRMPD action spectroscopy, ER-CID experiments, and theoretical approaches investigate intrinsic L-thymidine properties compared to D-thymidine: Findings support robust methodology Soley, Erik O.; Devereaux, Zachary J.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 441, (2019), pp. 32-43)
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Structures and Relative Glycosidic Bond Stabilities of Protonated 2 '-Fluoro-Substituted Purine Nucleosides Devereaux, Zachary J.; He, C.C.; Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 8, (2019), pp. 1521-1536)
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Zinc and Cadmium Complexation of L-Threonine: An Infrared Multiple Photon Dissociation Spectroscopy and Theoretical Study Boles, G.C.; Hightower, Randy L.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 44, (2019), pp. 9343-9354)
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Insights into the Recognition of Phosphate Groups by Peptidic Arginine from Action Spectroscopy and Quantum Chemical Computations Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 35, (2019), pp. 7528-7535)
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Characterization of protonated AcAlaDab and AcDabAla by IRMPD spectroscopy and molecular modeling Batoon, Patrick; Zhang, Yuntao; Berden, G. ; Oomens, J. ; Ren, Jianhua2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 444, (2019), article UNSP 116178)
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The Glycosylation Mechanisms of 6,3-Uronic Acid Lactones Elferink, Hidde; Mensink, R.A.; Castelijns, Wilke W.A.; Jansen, Oscar; Bruekers, J.P.J.; Martens, J.K.; Oomens, J. ; Rijs, Anouk M.; Boltje, T.J.2019, Article / Letter to editor (Angewandte Chemie. International Edition, vol. 58, iss. 26, (2019), pp. 8746-8751)
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Ionic Pd/NHC Catalytic System Enables Recoverable Homogeneous Catalysis: Mechanistic Study and Application in the Mizoroki–Heck Reaction Eremin, Dmitry B.; Denisova, Ekaterina A.; Yu. Kostyukovich, Alexander; Martens, J.K.; Berden, W.C.M. ; Oomens, J. ; Khrustalev, Victor N.; Chernyshev, Victor M.; Ananikov, Valentine P.2019, Article / Letter to editor (Chemistry : a European Journal, vol. 25, iss. 72, (2019), pp. 16564-16572)
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Infrared Ion Spectroscopy of Environmental Organic Mixtures: Probing the Composition of alpha-Pinene Secondary Organic Aerosol Walhout, Emma Q.; Dorn, Shelby E.; Martens, J.K.; Berden, G. ; Oomens, J. ; Cheong, Paul H.-Y.; Kroll, Jesse H.; O'Brien, Rachel E.2019, Article / Letter to editor (Environmental Science and Technology, vol. 53, iss. 13, (2019), pp. 7604-7612)
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Spectroscopic Evidence for Lactam Formation in Terminal Ornithine b(2)(+) and b(3)(+) Fragment Ions Smith, Zachary M.; Wang, Xiye; Scheerer, Jonathan R.; Martens, J.K.; Berden, G. ; Oomens, J. ; Wysocki, V.; Poutsma, J.C.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1565-1577)
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The infrared spectrum of protonated buckminsterfullerene C60H+ Palotás, J.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.2019, Article / Letter to editor (Nature Astronomy, (2019))
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Gas-phase vibrations of the anionic, hydrogen-bonded dimer of 9-methylguanine Switzer, Christopher; Martens, J.K.; Kempkes, L.J.M.; Berden, G. ; Oomens, J. ; Morton, T.H.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 446, (2019), article UNSP 116211)
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Measurement of the asymmetric UO22+ stretching frequency for [(UO2)-O-VI(F)(3)](-) using IRMPD spectroscopy Tatosian, Irena; Metzler, Luke; Graca, Connor; Bubas, Amanda; Corcovilos, T.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 446, (2019), article UNSP 116231)
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Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study Kempkes, L.J.M.; Boles, G.C.; Martens, J.K.; Berden, G. ; Armentrout, P.B.; Oomens, J.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 9, (2018), pp. 2424-2436)
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Loss of water from protonated polyglycines: interconversion and dissociation of the product imidazolone ions Lam, K.H.Brian; Lau, J.K.C.; Lai, Cheuk-Kuen; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 27, (2018), pp. 18688-18698)
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Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane Bouwman, J.; Horst, Stefan; Oomens, J.2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 23, (2018), pp. 3211-3218)
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Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Aspartic Acid Complexes with Zn2+ and Cd2+ Boles, G.C.; Hightower, Randy L.; Coates, R.A.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 14, (2018), pp. 3836-3853)
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Unimolecular Fragmentation of Deprotonated Diproline [Pro(2)-H](-) Studied by Chemical Dynamics Simulations and IRMPD Spectroscopy Martin-Somer, Ana; Martens, J.K.; Grzetic, J.; Hase, William L.; Oomens, J. ; Spezia, R.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 10, (2018), pp. 2612-2625)
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w-Type ions formed by electron transfer dissociation of Cys-containing peptides investigated by infrared ion spectroscopy Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Mass Spectrometry, vol. 53, iss. 12, (2018), pp. 1207-1213)
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Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase? Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 25, (2018), pp. 5589-5596)
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Conformations of Protonated AlaDap and DapAla Characterized by IRMPD Spectroscopy and Molecular Modeling Batoon, Patrick; Oomens, J. ; Berden, G. ; Ren, Jianhua2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 8, (2018), pp. 2191-2202)
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Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 9, iss. 22, (2018), pp. 6404-6411)
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Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation Jian, Jiwen; Hu, Shu-Xian; Li, Wan-Lu; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J. ; Li, Jun; Gibson, J.K.2018, Article / Letter to editor (Inorganic Chemistry, vol. 57, iss. 7, (2018), pp. 4125-4134)
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Structural Investigation of the Hormone Melatonin and Its Alkali and Alkaline Earth Metal Complexes in the Gas Phase Chakrabarty, Satrajit; DiTucci, Matthew J.; Berden, G. ; Oomens, J. ; Williams, E.R.2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 9, (2018), pp. 1835-1847)
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Modified Quadrupole Ion Trap Mass Spectrometer for Infrared Ion Spectroscopy: Application to Protonated Thiated Uridines Hamlow, L.A.; Zhu, Y.; Devereaux, Zachary J.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 11, (2018), pp. 2125-2137)
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Inverse Sandwich Cyclopentadienyl Complexes of Sodium in the Gas Phase Featherstone, Joshua; Chong, Tom; Martens, J.K.; Oomens, J. ; McMahon, Terrance B.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 43, (2018), pp. 8659-8664)
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High-resolution IR absorption spectroscopy of polycyclic aromatic hydrocarbons in the 3 mu m region: role of hydrogenation and alkylation Maltseva, E.; Mackie, C.J.; Candian, A.; Petrignani, Annemieke ; Huang, X.; Lee, Timothy J.; Oomens, J. ; Buma, Wybren Jan2018, Article / Letter to editor (Astronomy & Astrophysics, vol. 610, (2018), pp. 1-9, article A65)
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Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy Martens, J.K.; Berden, G. ; Bentlage, Herman; Coene, K.L.M. ; Engelke, U.F. ; Wishart, D.; Scherpenzeel, M. van; Kluijtmans, L.A. ; Wevers, R.A. ; Oomens, J.2018, Article / Letter to editor (Journal of Inherited Metabolic Disease, vol. 41, iss. 3, (2018), pp. 367-377)
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Direct Experimental Characterization of Glycosyl Cations by Infrared Ion Spectroscopy Elferink, Hidde; Severijnen, M.E.; Martens, J.K.; Mensink, R.A.; Berden, G. ; Oomens, J. ; Rutjes, Floris P.J.T. ; Rijs, A.M.; Boltje, T.J.2018, Article / Letter to editor (Journal of the American Chemical Society, vol. 140, iss. 19, (2018), pp. 6034-6038)
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Preferential host-guest coordination of nonactin with ammonium and hydroxylammonium Martínez–Haya, Bruno; Avilés–Moreno, Juan Ramón; Gámez, Francisco; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Chemical Physics, vol. 149, iss. 22, (2018), pp. 1-7, article 225101)
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Dehydration reactions of protonated dipeptides containing asparagine or glutamine investigated by infrared ion spectroscopy Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 90-100)
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