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Browsing by Author "Oomens, J."
Now showing items 1-50 of 205
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Gas-phase structures of protonated arabino nucleosides Hamlow, L.A.; He, C.C.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Soley, Erik O.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 438, (2019), pp. 124-134) -
Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations Piatkivskyi, A.; Lau, J.K.C.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.; Ryzhov, V.2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 112-121)
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Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde Perez, Evan; Corcovilos, T.A.; Gibson, J.K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 58-72)
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Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+ Owen, Cameron J.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 97-111)
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Influence of 2'-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides Devereaux, Zachary J.; Roy, H.A.; He, C.C.; Zhu, Y.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of Fluorine Chemistry, vol. 219, (2019), pp. 10-22)
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A Cl- Hinge for Cyclen Macrocycles: Ionic Interactions and Tweezer-Like Complexes Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2019, Article / Letter to editor (Frontiers in Chemistry, vol. 7, (2019), pp. 1-9, article 143) -
The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy Cazaux, Stephanie; Arribard, Yann; Egorov, Dmitrii; Palotas, Julianna; Hoekstra, Ronnie; Berden, G. ; Oomens, J. ; Schlatholter, Thomas2019, Article / Letter to editor (The Astrophysical Journal, vol. 875, iss. 1, (2019), pp. 1-8, article 27)
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Impact of the 2-and 3-Sugar Hydroxyl Moieties on Gas-Phase Nucleoside Structure Hamlow, L.A.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 5, (2019), pp. 832-845)
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Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs Munshi, M.U.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.2019, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 123, iss. 19, (2019), pp. 4149-4157)
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Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes Boles, G.C.; Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 64-82)
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Structures of [GPGG + H - H2O](+) and [GPGG + H - H2O - NH=CH2](+) ions; evidence of rearrangement prior to dissociation Lau, J.K.C.; Lai, Cheuk-Kuen; Lam, K.H.Brian; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 51-57)
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Investigation of the position of the radical in z(3)-ions resulting from electron transfer dissociation using infrared ion spectroscopy Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Houthuijs, Kas J.; Oomens, J.2019, Article / Letter to editor (Faraday Discussions, vol. 217, (2019), pp. 434-452)
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Structures and Relative Glycosidic Bond Stabilities of Protonated 2 '-Fluoro-Substituted Purine Nucleosides Devereaux, Zachary J.; He, C.C.; Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 8, (2019), pp. 1521-1536)
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The Glycosylation Mechanisms of 6,3-Uronic Acid Lactones Elferink, Hidde; Mensink, R.A.; Castelijns, Wilke W.A.; Jansen, Oscar; Bruekers, J.P.J.; Martens, J.K.; Oomens, J. ; Rijs, Anouk M.; Boltje, T.J.2019, Article / Letter to editor (Angewandte Chemie. International Edition, vol. 58, iss. 26, (2019), pp. 8746-8751)
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Infrared Ion Spectroscopy of Environmental Organic Mixtures: Probing the Composition of alpha-Pinene Secondary Organic Aerosol Walhout, Emma Q.; Dorn, Shelby E.; Martens, J.K.; Berden, G. ; Oomens, J. ; Cheong, Paul H.-Y.; Kroll, Jesse H.; O'Brien, Rachel E.2019, Article / Letter to editor (Environmental Science and Technology, vol. 53, iss. 13, (2019), pp. 7604-7612)
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Spectroscopic Evidence for Lactam Formation in Terminal Ornithine b(2)(+) and b(3)(+) Fragment Ions Smith, Zachary M.; Wang, Xiye; Scheerer, Jonathan R.; Martens, J.K.; Berden, G. ; Oomens, J. ; Wysocki, V.; Poutsma, J.C.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1565-1577)
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Impact of Sodium Cationization on Gas-Phase Conformations of DNA and RNA Cytidine Mononucleotides Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1758-1767)
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Insights into the Recognition of Phosphate Groups by Peptidic Arginine from Action Spectroscopy and Quantum Chemical Computations Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 35, (2019), pp. 7528-7535)
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Guanidinium/ammonium competition and proton transfer in the interaction of the amino acid arginine with the tetracarboxylic 18-crown-6 ionophore Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 6, (2018), pp. 4067-4073)
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Equatorial coordination of uranyl: Correlating ligand charge donation with the O-yl-U-O-yl asymmetric stretch frequency Gibson, J.K.; Jong, Wibe A. de; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Organometallic Chemistry, vol. 857, (2018), pp. 94-100)
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Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study Kempkes, L.J.M.; Boles, G.C.; Martens, J.K.; Berden, G. ; Armentrout, P.B.; Oomens, J.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 9, (2018), pp. 2424-2436)
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Intra-cavity proton bonding and anharmonicity in the anionophore cyclen Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 13, (2018), pp. 8968-8975)
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Loss of water from protonated polyglycines: interconversion and dissociation of the product imidazolone ions Lam, K.H.Brian; Lau, J.K.C.; Lai, Cheuk-Kuen; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 27, (2018), pp. 18688-18698)
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Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane Bouwman, J.; Horst, Stefan; Oomens, J.2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 23, (2018), pp. 3211-3218)
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Complexes of Crown Ether Macrocycles with Methyl Guanidinium: Insights into the Capture of Charge in Peptides Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 17, (2018), pp. 2169-2175)
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Experimental and theoretical investigations of infrared multiple photon dissociation spectra of arginine complexes with Zn2+ and Cd2+ Chalifoux, Aaron M.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 31, (2018), pp. 20712-20725)
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Infrared multiple photon dissociation spectroscopy of cationized canavanine: Side-chain substitution influences gas-phase zwitterion formation Smith, Zachary M.; Steinmetz, V.; Martens, J.K.; Oomens, J. ; Poutsma, J.C.2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 158-173)
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An Unprecedented Retro-Mumm Rearrangement Revealed by ESI-MS/MS, IRMPD Spectroscopy, and DFT Calculations Iacobucci, Claudio; Reale, Samantha; Aschi, Massimiliano; Oomens, J. ; Berden, G. ; Angelis, Francesco De2018, Article / Letter to editor (Chemistry : a European Journal, vol. 24, iss. 27, (2018), pp. 7026-7032)
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Gas phase vibrations of an anionic, hydrogen-bonded homodimer of a nucleobase analogue: Isocytosino-8-trifluoromethylquinolone Bendo, J.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Morton, T.H.2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 206-211)
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Transition metal(II) complexes of histidine-containing tripeptides: Structures, and infrared spectroscopy by IRMPD Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 198-205)
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Conformations and N-glycosidic bond stabilities of sodium cationized 2-deoxycytidine and cytidine: Solution conformation of [Cyd + Na](+) is preserved upon ESI Zhu, Y.; Hamlow, L.A.; He, C.C.; Roy, H.A.; Cunningham, N.A.; Munshi, M.U.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 18-27)
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Competition between salt bridge and non-zwitterionic structures in deprotonated amino acid dimers Heiles, S.; Berden, G. ; Oomens, J. ; Williams, E.R.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 23, (2018), pp. 15641-15652)
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Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Aspartic Acid Complexes with Zn2+ and Cd2+ Boles, G.C.; Hightower, Randy L.; Coates, R.A.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 14, (2018), pp. 3836-3853) -
Unimolecular Fragmentation of Deprotonated Diproline [Pro(2)-H](-) Studied by Chemical Dynamics Simulations and IRMPD Spectroscopy Martin-Somer, Ana; Martens, J.K.; Grzetic, J.; Hase, William L.; Oomens, J. ; Spezia, R.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 10, (2018), pp. 2612-2625)
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w-Type ions formed by electron transfer dissociation of Cys-containing peptides investigated by infrared ion spectroscopy Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Mass Spectrometry, vol. 53, iss. 12, (2018), pp. 1207-1213)
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Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase? Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 25, (2018), pp. 5589-5596)
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Conformations of Protonated AlaDap and DapAla Characterized by IRMPD Spectroscopy and Molecular Modeling Batoon, Patrick; Oomens, J. ; Berden, G. ; Ren, Jianhua2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 8, (2018), pp. 2191-2202)
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Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 9, iss. 22, (2018), pp. 6404-6411)
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Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation Jian, Jiwen; Hu, Shu-Xian; Li, Wan-Lu; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J. ; Li, Jun; Gibson, J.K.2018, Article / Letter to editor (Inorganic Chemistry, vol. 57, iss. 7, (2018), pp. 4125-4134)
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Structural Investigation of the Hormone Melatonin and Its Alkali and Alkaline Earth Metal Complexes in the Gas Phase Chakrabarty, Satrajit; DiTucci, Matthew J.; Berden, G. ; Oomens, J. ; Williams, E.R.2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 9, (2018), pp. 1835-1847)
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Modified Quadrupole Ion Trap Mass Spectrometer for Infrared Ion Spectroscopy: Application to Protonated Thiated Uridines Hamlow, L.A.; Zhu, Y.; Devereaux, Zachary J.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 11, (2018), pp. 2125-2137)
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Inverse Sandwich Cyclopentadienyl Complexes of Sodium in the Gas Phase Featherstone, Joshua; Chong, Tom; Martens, J.K.; Oomens, J. ; McMahon, Terrance B.2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 43, (2018), pp. 8659-8664)
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Preferential host-guest coordination of nonactin with ammonium and hydroxylammonium Martínez–Haya, Bruno; Avilés–Moreno, Juan Ramón; Gámez, Francisco; Berden, G. ; Oomens, J.2018, Article / Letter to editor (Journal of Chemical Physics, vol. 149, iss. 22, (2018), pp. 1-7, article 225101)
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High-resolution IR absorption spectroscopy of polycyclic aromatic hydrocarbons in the 3 mu m region: role of hydrogenation and alkylation Maltseva, E.; Mackie, C.J.; Candian, A.; Petrignani, Annemieke ; Huang, X.; Lee, Timothy J.; Oomens, J. ; Buma, Wybren Jan2018, Article / Letter to editor (Astronomy & Astrophysics, vol. 610, (2018), pp. 1-9, article A65)
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Structural characterization of nucleotide 5-triphosphates by infrared ion spectroscopy and theoretical studies Outersterp, R.E. van ; Martens, J.K.; Berden, G. ; Steill, J.D.; Oomens, J. ; Rijs, A.M.2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 44, (2018), pp. 28319-28330)
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Dehydration reactions of protonated dipeptides containing asparagine or glutamine investigated by infrared ion spectroscopy Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 90-100)
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Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy Martens, J.K.; Berden, G. ; Bentlage, Herman; Coene, K.L.M. ; Engelke, U.F. ; Wishart, D.; Scherpenzeel, M. van; Kluijtmans, L.A. ; Wevers, R.A. ; Oomens, J.2018, Article / Letter to editor (Journal of Inherited Metabolic Disease, vol. 41, iss. 3, (2018), pp. 367-377)
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Direct Experimental Characterization of Glycosyl Cations by Infrared Ion Spectroscopy Elferink, Hidde; Severijnen, M.E.; Martens, J.K.; Mensink, R.A.; Berden, G. ; Oomens, J. ; Rutjes, Floris P.J.T. ; Rijs, A.M.; Boltje, T.J.2018, Article / Letter to editor (Journal of the American Chemical Society, vol. 140, iss. 19, (2018), pp. 6034-6038)
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Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Glutamine Complexes with Zn2+ and Cd2+ Boles, G.C.; Coates, R.A.; Berden, G. ; Oomens, J. ; Armentrout, P.B.2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 35, (2017), pp. 12394-12406)
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