Browsing by Author "Oomens, J."

Gas-phase structures of protonated arabino nucleosides

Hamlow, L.A.; He, C.C.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Soley, Erik O.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 438, (2019), pp. 124-134)

Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations

Piatkivskyi, A.; Lau, J.K.C.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.; Ryzhov, V.

2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 112-121)

Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde

Perez, Evan; Corcovilos, T.A.; Gibson, J.K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van

2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 58-72)

Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+

Owen, Cameron J.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 97-111)

Influence of 2'-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides

Devereaux, Zachary J.; Roy, H.A.; He, C.C.; Zhu, Y.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2019, Article / Letter to editor (Journal of Fluorine Chemistry, vol. 219, (2019), pp. 10-22)

Guanidinium/ammonium competition and proton transfer in the interaction of the amino acid arginine with the tetracarboxylic 18-crown-6 ionophore

Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 6, (2018), pp. 4067-4073)

Equatorial coordination of uranyl: Correlating ligand charge donation with the O-yl-U-O-yl asymmetric stretch frequency

Gibson, J.K.; Jong, Wibe A. de; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Organometallic Chemistry, vol. 857, (2018), pp. 94-100)

Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study

Kempkes, L.J.M.; Boles, G.C.; Martens, J.K.; Berden, G. ; Armentrout, P.B.; Oomens, J.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 9, (2018), pp. 2424-2436)

Unimolecular Fragmentation of Deprotonated Diproline [Pro(2)-H](-) Studied by Chemical Dynamics Simulations and IRMPD Spectroscopy

Martin-Somer, Ana; Martens, J.K.; Grzetic, J.; Hase, William L.; Oomens, J. ; Spezia, R.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 10, (2018), pp. 2612-2625)

High-resolution IR absorption spectroscopy of polycyclic aromatic hydrocarbons in the 3 mu m region: role of hydrogenation and alkylation

Maltseva, E.; Mackie, C.J.; Candian, A.; Petrignani, Annemieke ; Huang, X.; Lee, Timothy J.; Oomens, J. ; Buma, Wybren Jan

2018, Article / Letter to editor (Astronomy & Astrophysics, vol. 610, (2018), pp. 1-9, article A65)

Conformations of Protonated AlaDap and DapAla Characterized by IRMPD Spectroscopy and Molecular Modeling

Batoon, Patrick; Oomens, J. ; Berden, G. ; Ren, Jianhua

2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 8, (2018), pp. 2191-2202)

Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Aspartic Acid Complexes with Zn2+ and Cd2+

Boles, G.C.; Hightower, Randy L.; Coates, R.A.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2018, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 122, iss. 14, (2018), pp. 3836-3853)

Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation

Jian, Jiwen; Hu, Shu-Xian; Li, Wan-Lu; Stipdonk, M.J. Van; Martens, J.K.; Berden, G. ; Oomens, J. ; Li, Jun; Gibson, J.K.

2018, Article / Letter to editor (Inorganic Chemistry, vol. 57, iss. 7, (2018), pp. 4125-4134)

Intra-cavity proton bonding and anharmonicity in the anionophore cyclen

Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 13, (2018), pp. 8968-8975)

Loss of water from protonated polyglycines: interconversion and dissociation of the product imidazolone ions

Lam, K.H.Brian; Lau, J.K.C.; Lai, Cheuk-Kuen; Chu, Ivan K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 27, (2018), pp. 18688-18698)

Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers

Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 9, iss. 22, (2018), pp. 6404-6411)

Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane

Bouwman, J.; Horst, Stefan; Oomens, J.

2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 23, (2018), pp. 3211-3218)

Structural characterization of nucleotide 5-triphosphates by infrared ion spectroscopy and theoretical studies

Outersterp, R.E. van ; Martens, J.K.; Berden, G. ; Steill, J.D.; Oomens, J. ; Rijs, A.M.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 44, (2018), pp. 28319-28330)

Complexes of Crown Ether Macrocycles with Methyl Guanidinium: Insights into the Capture of Charge in Peptides

Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2018, Article / Letter to editor (Chemphyschem, vol. 19, iss. 17, (2018), pp. 2169-2175)

Modified Quadrupole Ion Trap Mass Spectrometer for Infrared Ion Spectroscopy: Application to Protonated Thiated Uridines

Hamlow, L.A.; Zhu, Y.; Devereaux, Zachary J.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 11, (2018), pp. 2125-2137)

Inverse Sandwich Cyclopentadienyl Complexes of Sodium in the Gas Phase

Featherstone, Joshua; Chong, Tom; Martens, J.K.; Oomens, J. ; McMahon, Terrance B.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 43, (2018), pp. 8659-8664)

Structural Investigation of the Hormone Melatonin and Its Alkali and Alkaline Earth Metal Complexes in the Gas Phase

Chakrabarty, Satrajit; DiTucci, Matthew J.; Berden, G. ; Oomens, J. ; Williams, E.R.

2018, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 29, iss. 9, (2018), pp. 1835-1847)

Experimental and theoretical investigations of infrared multiple photon dissociation spectra of arginine complexes with Zn2+ and Cd2+

Chalifoux, Aaron M.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 31, (2018), pp. 20712-20725)

Infrared multiple photon dissociation spectroscopy of cationized canavanine: Side-chain substitution influences gas-phase zwitterion formation

Smith, Zachary M.; Steinmetz, V.; Martens, J.K.; Oomens, J. ; Poutsma, J.C.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 158-173)

An Unprecedented Retro-Mumm Rearrangement Revealed by ESI-MS/MS, IRMPD Spectroscopy, and DFT Calculations

Iacobucci, Claudio; Reale, Samantha; Aschi, Massimiliano; Oomens, J. ; Berden, G. ; Angelis, Francesco De

2018, Article / Letter to editor (Chemistry : a European Journal, vol. 24, iss. 27, (2018), pp. 7026-7032)

Direct Experimental Characterization of Glycosyl Cations by Infrared Ion Spectroscopy

Elferink, Hidde; Severijnen, M.E.; Martens, J.K.; Mensink, R.A.; Berden, G. ; Oomens, J. ; Rutjes, Floris P.J.T. ; Rijs, A.M.; Boltje, T.J.

2018, Article / Letter to editor (Journal of the American Chemical Society, vol. 140, iss. 19, (2018), pp. 6034-6038)

w-Type ions formed by electron transfer dissociation of Cys-containing peptides investigated by infrared ion spectroscopy

Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Mass Spectrometry, vol. 53, iss. 12, (2018), pp. 1207-1213)

Gas phase vibrations of an anionic, hydrogen-bonded homodimer of a nucleobase analogue: Isocytosino-8-trifluoromethylquinolone

Bendo, J.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Morton, T.H.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 206-211)

Transition metal(II) complexes of histidine-containing tripeptides: Structures, and infrared spectroscopy by IRMPD

Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 198-205)

Conformations and N-glycosidic bond stabilities of sodium cationized 2-deoxycytidine and cytidine: Solution conformation of [Cyd + Na](+) is preserved upon ESI

Zhu, Y.; Hamlow, L.A.; He, C.C.; Roy, H.A.; Cunningham, N.A.; Munshi, M.U.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 18-27)

Dehydration reactions of protonated dipeptides containing asparagine or glutamine investigated by infrared ion spectroscopy

Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 429, (2018), pp. 90-100)

Preferential host-guest coordination of nonactin with ammonium and hydroxylammonium

Martínez–Haya, Bruno; Avilés–Moreno, Juan Ramón; Gámez, Francisco; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (Journal of Chemical Physics, vol. 149, iss. 22, (2018), pp. 1-7, article 225101)

Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy

Martens, J.K.; Berden, G. ; Bentlage, Herman; Coene, K.L.M. ; Engelke, U.F. ; Wishart, D.; Scherpenzeel, M. van; Kluijtmans, L.A. ; Wevers, R.A. ; Oomens, J.

2018, Article / Letter to editor (Journal of Inherited Metabolic Disease, vol. 41, iss. 3, (2018), pp. 367-377)

Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase?

Dunbar, R.C.; Martens, J.K.; Berden, G. ; Oomens, J.

2018, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 122, iss. 25, (2018), pp. 5589-5596)

Competition between salt bridge and non-zwitterionic structures in deprotonated amino acid dimers

Heiles, S.; Berden, G. ; Oomens, J. ; Williams, E.R.

2018, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 20, iss. 23, (2018), pp. 15641-15652)

Facile pentagon formation in the dissociation of polyaromatics

Haas, A.J. de; Oomens, J. ; Bouwman, J.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 4, (2017), pp. 2974-2980)

Irmpd Spectroscopy Sheds New (Infrared) Light on the Sulfate Pattern of Carbohydrates

Schindler, B.; Barnes, L.; Gray, C.J.; Chambert, S.; Flitsch, S.L.; Oomens, J. ; Daniel, R.; Allouche, A.R.; Compagnon, I.

2017, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 121, iss. 10, (2017), pp. 2114-2120)

Infrared multiple-photon dissociation action spectroscopy of the b(2)(+) ion from PPG: Evidence of third residue affecting b(2)(+) fragment structure

Poutsma, J.C.; Martens, J.K.; Oomens, J. ; Maitre, P.; Steinmetz, V.; Bernier, M.; Jia, M.X.; Wysocki, V.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 7, (2017), pp. 1482-1488)

Water microsolvation can switch the binding mode of Ni(II) with small peptides

Dunbar, R.C.; Martens, Jonathan; Berden, G. ; Oomens, J.

2017, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 8, iss. 12, (2017), pp. 2634-2638)

Hydrogen tunneling above room temperature evidenced by infrared ion spectroscopy

Schäfer, M.; Peckelsen, K.; Paul, M.; Martens, Jonathan; Oomens, J. ; Berden, G. ; Berkessel, A.; Meijer, A.J.H.M.

2017, Article / Letter to editor (Journal of the American Chemical Society, vol. 139, iss. 16, (2017), pp. 5779-5786)

Isolated alkali cation complexes of the antibiotic ionophore nonactin: Correlation with crystalline structures

Aviles-Moreno, J.R.; Gamez, F.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 23, (2017), pp. 14984-14991)

Benchmark Ditopic Binding of Cl- and Cs+ by the Macrocycle Hexacyclen

Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2017, Article / Letter to editor (Chemphyschem, vol. 18, iss. 10, (2017), pp. 1324-1332)

N3 and O2 protonated conformers of the cytosine mononucleotides coexist in the gas phase

Wu, R.R.; Hamlow, L.A.; He, C.C.; Nei, Y.w.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 8, (2017), pp. 1638-1646)

Structure and dissociation pathways of protonated tetralin (1,2,3,4-tetrahydronaphthalene)

Vala, M.; Oomens, J. ; Berden, G.

2017, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 121, iss. 24, (2017), pp. 4606-4612)

Effects of sodium cationization versus protonation on the conformations and N-glycosidic bond stabilities of sodium cationized Urd and dUrd: Solution conformation of [Urd+Na]+ is preserved upon ESI

Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Strobehn, S.F.; Gao, J.; Munshi, M.U.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 27, (2017), pp. 17637-17652)

Correction: Zn2+ and cd2+ cationized serine complexes: Infrared multiple photon dissociation spectroscopy and density functional theory investigations (vol 18, pg 22434, 2016)

Coates, R.A.; Boles, G.C.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 27, (2017), pp. 18100-18101)

The intrinsic basicity of the phosphate backbone exceeds that of uracil and thymine residues: protonation of the phosphate moiety is preferred over the nucleobase for pdThd and pUrd

Wu, R.R.; Hamlow, L.A.; He, C.C.; Nei, Y.w.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 45, (2017), pp. 30351-30361)

Cleaving Off Uranyl Oxygens through Chelation: A Mechanistic Study in the Gas Phase

Abergel, R.J.; Jong, W.A.; Deblonde, G.J.-P.; Dau, P.D.; Captain, I.; Eaton, T.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Gibson, J.K.

2017, Article / Letter to editor (Inorganic Chemistry, vol. 56, iss. 21, (2017), pp. 12930-12937)

Hydrogen Liberation from Gaseous 2-Bora-1,3-diazacycloalkanium Cations.

Bendo, J.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Morton, T.H.

2017, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 121, iss. 41, (2017), pp. 7910-7916)

Influence of Transition Metal Cationization versus Sodium Cationization and Protonation on the Gas-Phase Tautomeric Conformations and Stability of Uracil: Application to [Ura+Cu](+) and [Ura+Ag]().

Akinyemi, T.E.; Wu, R.R.; Nei, Y.w.; Cunningham, N.A.; Roy, H.A.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 11, (2017), pp. 2438-2453)

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