Browsing by Author "Oomens, J."

Now showing items 1-50 of 243

Mass spectrometry-based identification of ortho-, meta- and para-isomers using infrared ion spectroscopy
Outersterp, Rianne E. van ; Martens, Jonathan; Berden, Giel ; Koppen, Valerie; Cuyckens, Filip; Oomens, Jos
2020, Article / Letter to editor (Analyst, vol. 145, iss. 18, (2020), pp. 6162-6170)
2-Methyl-pentanoyl-carnitine (2-MPC): a urine biomarker for patent Ascaris lumbricoides infection
Lagatie, O.; Verheyen, A.; Asten, S.; Odiere, M.R.; Djuardi, Y.; Levecke, B.; Outersterp, R.E. van ; Oomens, J. ; Cuyckens, F.; Stuyver, L.J.
2020, Article / Letter to editor (Scientific Reports, vol. 10, iss. 1, (2020), pp. 1-13, article 15780)
Influence of the local environment on the intrinsic structures of gas-phase cytidine-5 '-monophosphates
Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2020, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 447, (2020), pp. 1-12, article 116234)
Multipodal coordination and mobility of molecular cations inside the macrocycle valinomycin
Ramon Aviles-Moreno, Juan; Gamez, Francisco; Berden, Giel ; Martens, Jonathan; Oomens, Jos ; Martinez-Haya, Bruno
2020, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 22, iss. 35, (2020), pp. 19725-19734)
Formation of n -> pi(+)interaction facilitating dissociative electron transfer in isolated tyrosine-containing molecular peptide radical cations
Tang, Wai Kit; Mu, Xiaoyan; Li, Mengzhu; Martens, Jonathan; Berden, Giel ; Oomens, Jos ; Chu, Ivan K.; Siu, Chi-Kit
2020, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 22, iss. 37, (2020), pp. 21393-21402)
Dissociative electron transfer of copper(ii) complexes of glycyl(glycyl/alanyl)tryptophanin vacuo: IRMPD action spectroscopy provides evidence of transition from zwitterionic to non-zwitterionic peptide structures
Li, Yinan; Li, Mengzhu; Spencer, Daniel M.; Lau, Justin Kai-Chi; Martens, Jonathan; Berden, Giel ; Oomens, Jos ; Siu, Chi-Kit; Chu, Ivan K.
2020, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 22, iss. 23, (2020), pp. 13084-13091)
Photolysis-induced scrambling of PAHs as a mechanism for deuterium storage
Wiersma, Sandra D.; Candian, Alessandra; Bakker, Joost M. ; Martens, Jonathan; Berden, Giel ; Oomens, J. ; Buma, Wybren Jan; Petrignani, Annemieke
2020, Article / Letter to editor (Astronomy & Astrophysics, vol. 635, (2020), article A9)
The infrared spectrum of protonated buckminsterfullerene C60H+
Palotas, Julianna; Martens, Jonathan; Berden, Giel ; Oomens, J.
2020, Article / Letter to editor (Nature Astronomy, vol. 4, iss. 3, (2020), pp. 240-245)
A Combined Infrared Ion Spectroscopy and Computational Chemistry Study of Hydroxyproline Isomers
Acharya, Baku; Kaushalya, W.K.D.N.; Martens, Jonathan; Berden, Giel ; Oomens, Jos ; Patrick, Amanda L.
2020, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 31, iss. 6, (2020), pp. 1205-1211)
Water Loss from Protonated XxxSer and XxxThr Dipeptides Gives Oxazoline-Not Oxazolone-Product Ions
Oomens, J. ; Kempkes, L.J.M.; Geurts, T.P.J.; Dijk, J. van; Martens, J.K.; Berden, G. ; Armentrout, P.B.
2020, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 31, iss. 10, (2020), pp. 2111-2123)
Identification of novel fragmentation pathways and fragment ion structures in the tandem mass spectra of protonated synthetic cathinones
Tyler Davidson, J.; Piacentino, Elettra L.; Sasiene, Zachary J.; Abiedalla, Younis; DeRuiter, Jack; Randall Clark, C.; Berden, G. ; Oomens, J. ; Ryzhov, V.; Jackson, Glen P.
2020, Article / Letter to editor (Forensic Chemistry, vol. 19, (2020), pp. 1-16, article 100245)
Sodium cationization can disrupt the intramolecular hydrogen bond that mediates the sunscreen activity of oxybenzone
Berenbeim, Jacob A.; Wong, Natalie G.K.; Cockett, Martin C.R.; Berden, G. ; Oomens, J. ; Rijs, Anouk M.; Dessent, Caroline
2020, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 22, iss. 35, (2020), pp. 19522-19531)
Unravelling the Keto-Enol Tautomer Dependent Photochemistry and Degradation Pathways of the Protonated UVA Filter Avobenzone
Berenbeim, Jacob A.; Wong, Natalie G.K.; Cockett, Martin C.R.; Berden, G. ; Oomens, J. ; Rijs, Anouk M.; Dessent, Caroline
2020, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 124, iss. 15, (2020), pp. 2919-2930)
Mass-Spectrometry-Based Identification of Synthetic Drug Isomers Using Infrared Ion Spectroscopy
Kranenburg, Ruben F.; Geenen, F.A.M.G. van; Berden, Giel ; Oomens, Jos ; Martens, Jonathan; Asten, Arian C. van
2020, Article / Letter to editor (Analytical Chemistry, vol. 92, iss. 10, (2020), pp. 7282-7288)
Vibrational Spectra of the Ruthenium-Tris-Bipyridine Dication and Its Reduced Form in Vacuo
Munshi, M.U.; Martens, Jonathan; Berden, Giel ; Oomens, J.
2020, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 124, iss. 12, (2020), pp. 2449-2459)
Characterization of glycosyl dioxolenium ions and their role in glycosylation reactions
Hansen, Thomas; Elferink, Hidde; Hengst, Jacob M.A. van; Houthuijs, Kas J.; Remmerswaal, Wouter A.; Kromm, Alexandra; Berden, Giel ; Rijs, Anouk M.; Rutjes, Floris P.J.T. ; Martens, Jonathan; Oomens, Jos ; Codee, Jeroen D.C.; Boltje, T.J. et al. sine al.
2020, Article / Letter to editor (Nature Communications, vol. 11, iss. 1, (2020), pp. 1-9, article 2664)
IRMPD Spectroscopic and Theoretical Structural Investigations of Zinc and Cadmium Dications Bound to Histidine Dimers
Martens, J.K.; Berden, W.C.M. ; Oomens, J. ; Schaefer, M.; Armentrout, P.B.
2020, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 124, iss. 49, (2020), pp. 10266-10276)
Mechanistic Study of Pd/NHC-Catalyzed Sonogashira Reaction: Discovery of NHC-Ethynyl Coupling Process
Eremin, D.B.; Boiko, D.A.; Kostyukovich, A.Y.; Burykina, J.V.; Denisova, E.A.; Anania, M.; Martens, J.K.; Berden, Giel ; Oomens, J. ; Roithova, J.; Ananikov, V.P. et al. sine al.
2020, Article / Letter to editor (Chemistry : a European Journal, vol. 26, iss. 67, (2020), pp. 15672-15681)
Infrared ion spectroscopy: New opportunities for small-molecule identification in mass spectrometry - A tutorial perspective
Martens, Jonathan; Outersterp, Rianne E. van ; Vreeken, R.J.; Cuyckens, F.; Coene, K.L.M. ; Engelke, U.F. ; Kluijtmans, L.A.J. ; Wevers, R.A. ; Buydens, Lutgarde M.C. ; Redlich, Britta ; Berden, Giel ; Oomens, J. et al. sine al.
2020, Article / Letter to editor (Analytica Chimica Acta, vol. 1093, (2020), pp. 1-15)
Characterization of holmium(iii)-acetylacetonate complexes derived from therapeutic microspheres by infrared ion spectroscopy
Houthuijs, K.J.; Martens, J.K.; Arranja, A.G.; Berden, W.C.M. ; Nijsen, J.F.W.; Oomens, J.
2020, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 22, (2020), pp. 15716-15722)
Mechanistic examination of C-alpha-C(beta)tyrosyl bond cleavage: Spectroscopic investigation of the generation of alpha-glycyl radical cations from tyrosyl (glycyl/alanyl)tryptophan
Li, Y.; Li, M.; Spencer, D.M.; Martens, J.K.; Berden, W.C.M. ; Oomens, J. ; Siu, C.; Chu, I.K.
2020, Article / Letter to editor (Journal of Mass Spectrometry, (2020), article e4630)
Zinc and cadmium complexation of L-methionine: An infrared multiple photon dissociation spectroscopy and theoretical study
Boles, G.C.; Stevenson, B.C.; Hightower, R.L.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2020, Article / Letter to editor (Journal of Mass Spectrometry, (2020), article e4580)
Characterization of protonated AcAlaDab and AcDabAla by IRMPD spectroscopy and molecular modeling
Batoon, Patrick; Zhang, Yuntao; Berden, G. ; Oomens, J. ; Ren, Jianhua
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 444, (2019), article UNSP 116178)
Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes
Boles, G.C.; Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 442, (2019), pp. 64-82)
An automatic variable laser attenuator for IRMPD spectroscopy and analysis of power-dependence in fragmentation spectra
Berden, Giel ; Derksen, M. ; Houthuijs, Kas J.; Martens, Jonathan; Oomens, J.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 443, (2019), pp. 1-8)
Hydrogen tunneling avoided: enol-formation from a charge-tagged phenyl pyruvic acid derivative evidenced by tandem-MS, IR ion spectroscopy and theory
Paul, Mathias; Peckelsen, Katrin; Thomulka, Thomas; Neudoerfl, Joerg; Martens, Jonathan; Berden, Giel ; Oomens, J. ; Meijer, Anthony J.H.M.; Schaefer, Mathias
2019, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 21, iss. 30, (2019), pp. 16591-16600)
Infrared Ion Spectroscopy of Environmental Organic Mixtures: Probing the Composition of alpha-Pinene Secondary Organic Aerosol
Walhout, Emma Q.; Dorn, Shelby E.; Martens, J.K.; Berden, G. ; Oomens, J. ; Cheong, Paul H.-Y.; Kroll, Jesse H.; O'Brien, Rachel E.
2019, Article / Letter to editor (Environmental Science and Technology, vol. 53, iss. 13, (2019), pp. 7604-7612)
Investigation of the position of the radical in z(3)-ions resulting from electron transfer dissociation using infrared ion spectroscopy
Kempkes, L.J.M.; Martens, J.K.; Berden, G. ; Houthuijs, Kas J.; Oomens, J.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, (2019), pp. 434-452)
Structures and Relative Glycosidic Bond Stabilities of Protonated 2 '-Fluoro-Substituted Purine Nucleosides
Devereaux, Zachary J.; He, C.C.; Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 8, (2019), pp. 1521-1536)
The FELion cryogenic ion trap beam line at the FELIX free-electron laser laboratory: infrared signatures of primary alcohol cations
Jusko, Pavol; Brünken, Sandra; Asvany, Oskar; Thorwirth, Sven; Stoffels, A.B.; Meer, Lex van der; Berden, Giel ; Redlich, B. ; Oomens, J. ; Schlemmer, Stephan
2019, Article / Letter to editor (Faraday Discussions, vol. 217, (2019), pp. 172-202)
Insights into the Recognition of Phosphate Groups by Peptidic Arginine from Action Spectroscopy and Quantum Chemical Computations
Ramon Aviles-Moreno, Juan; Berden, G. ; Oomens, J. ; Martinez-Haya, B.
2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 35, (2019), pp. 7528-7535)
Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations
Piatkivskyi, A.; Lau, J.K.C.; Berden, G. ; Oomens, J. ; Hopkinson, A.C.; Siu, K.W.M.; Ryzhov, V.
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 112-121)
Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde
Perez, Evan; Corcovilos, T.A.; Gibson, J.K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 58-72)
Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+
Owen, Cameron J.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 97-111)
The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy
Cazaux, Stephanie; Arribard, Yann; Egorov, Dmitrii; Palotas, Julianna; Hoekstra, Ronnie; Berden, G. ; Oomens, J. ; Schlatholter, Thomas
2019, Article / Letter to editor (The Astrophysical Journal, vol. 875, iss. 1, (2019), pp. 1-8, article 27)
Impact of the 2-and 3-Sugar Hydroxyl Moieties on Gas-Phase Nucleoside Structure
Hamlow, L.A.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 5, (2019), pp. 832-845)
Influence of 2'-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides
Devereaux, Zachary J.; Roy, H.A.; He, C.C.; Zhu, Y.; Cunningham, N.A.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of Fluorine Chemistry, vol. 219, (2019), pp. 10-22)
Gas-phase structures of protonated arabino nucleosides
Hamlow, L.A.; He, C.C.; Devereaux, Zachary J.; Roy, H.A.; Cunningham, N.A.; Soley, Erik O.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 438, (2019), pp. 124-134)
Impact of Sodium Cationization on Gas-Phase Conformations of DNA and RNA Cytidine Mononucleotides
Hamlow, L.A.; Nei, Y.w.; Wu, R.R.; Gao, J.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1758-1767)
Spectroscopic Evidence for Lactam Formation in Terminal Ornithine b(2)(+) and b(3)(+) Fragment Ions
Smith, Zachary M.; Wang, Xiye; Scheerer, Jonathan R.; Martens, J.K.; Berden, G. ; Oomens, J. ; Wysocki, V.; Poutsma, J.C.
2019, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 30, iss. 9, (2019), pp. 1565-1577)
Zinc and Cadmium Complexation of L-Threonine: An Infrared Multiple Photon Dissociation Spectroscopy and Theoretical Study
Boles, G.C.; Hightower, Randy L.; Berden, G. ; Oomens, J. ; Armentrout, P.B.
2019, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 123, iss. 44, (2019), pp. 9343-9354)
Gas-phase vibrations of the anionic, hydrogen-bonded dimer of 9-methylguanine
Switzer, Christopher; Martens, J.K.; Kempkes, L.J.M.; Berden, G. ; Oomens, J. ; Morton, T.H.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 446, (2019), article UNSP 116211)
Measurement of the asymmetric UO22+ stretching frequency for [(UO2)-O-VI(F)(3)](-) using IRMPD spectroscopy
Tatosian, Irena; Metzler, Luke; Graca, Connor; Bubas, Amanda; Corcovilos, T.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Stipdonk, M.J. Van
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 446, (2019), article UNSP 116231)
Pushing resolution in frequency and time: general discussion
Simons, Jack; Johnson, M.H.; Asmis, Knut; McCoy, Anne B.; Daly, Steven; Wester, Roland; Rijs, A.M.; Sarre, Peter; Gaigeot, Marie-Pierre; Mabbs, Richard; Jordan, Kenneth; Dessent, Caroline; Neumark, Daniel; Chou, Chin-wen; Gerber, Benny; Dopfer, Otto; Oomens, J. ; Krylov, Anna; Schlemmer, Stephan; Willitsch, Stefan; Verlet, Jan; Wild, Robert; Gatchell, Michael; Stockett, Mark; Roithova, J.; Beyer, Martin K.; Xantheas, Sotiris; Gibbard, Jemma; Dohnal, Petr et al. sine al.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 290-321)
Controlling internal degrees: general discussion
Ahmed, Musahid; Asmis, Knut; Avdonin, Ivan; Beyer, Martin K.; Bieske, Evan; Bougueroua, Sana; Chou, Chin-wen; Daly, Steven; Dopfer, Otto; Ellis-Gibbings, Lilian; Gabelica, Valérie; Gaigeot, Marie-Pierre; Gatchell, Michael; Gerber, Benny; Johnson, Christopher; Johnson, M.H.; Jordan, Kenneth; Krylov, Anna; Mayer, Martin; McCaslin, Laura; McCoy, Anne B.; Neumark, Daniel; Ončák, Milan; Oomens, J. ; Rijs, A.M.; Rizzo, Thomas; Roithová, Jana; Sarre, Peter; Schlemmer, Stephan; Simons, Jack; Stockett, Mark; Trevitt, Adam; Verlet, Jan; Wang, Xue-Bin; Wester, Roland; Willitsch, Stefan; Xantheas, Sotiris et al. sine al.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 138-171)
Going large(r): general discussion
Ahmed, Musahid; Daly, Steven; Dessent, Caroline; Dopfer, Otto; Gabelica, Valérie; Gaigeot, Marie-Pierre; Gatchell, Michael; Gerber, Benny; Gibbard, Jemma; Johnson, Christopher; Johnson, M.H.; Jordan, Kenneth; Krylov, Anna; Lovelock, Kevin; Mayer, Martin; McCaslin, Laura; McCoy, Anne B.; Neumark, Daniel; Nielsen, Steen Brøndsted; Oomens, J. ; Rijs, A.M.; Rizzo, Thomas; Roithová, Jana; Simons, Jack; Stockett, Mark; Trevitt, Adam; Verlet, Jan; Wang, Xue-Bin; Wester, Roland; Xantheas, Sotiris et al. sine al.
2019, Article / Letter to editor (Faraday Discussions, vol. 217, iss. 0, (2019), pp. 476-513)
Ionic Pd/NHC Catalytic System Enables Recoverable Homogeneous Catalysis: Mechanistic Study and Application in the Mizoroki–Heck Reaction
Eremin, Dmitry B.; Denisova, Ekaterina A.; Yu. Kostyukovich, Alexander; Martens, J.K.; Berden, W.C.M. ; Oomens, J. ; Khrustalev, Victor N.; Chernyshev, Victor M.; Ananikov, Valentine P.
2019, Article / Letter to editor (Chemistry : a European Journal, vol. 25, iss. 72, (2019), pp. 16564-16572)
IRMPD action spectroscopy, ER-CID experiments, and theoretical approaches investigate intrinsic L-thymidine properties compared to D-thymidine: Findings support robust methodology
Soley, Erik O.; Devereaux, Zachary J.; Hamlow, L.A.; Berden, G. ; Oomens, J. ; Rodgers, M.T.
2019, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 441, (2019), pp. 32-43)
Gas-phase metal ion chelation investigated with IRMPD spectroscopy: A brief review of Robert Dunbar’s contributions
Oomens, J. ; Polfer, N.C.; Berden, W.C.M. ; Eyler, J.R.
2019, Article / Letter to editor (European Journal of Mass Spectrometry, vol. 25, iss. 1, (2019), pp. 86-96)
The infrared spectrum of protonated buckminsterfullerene C60H+
Palotás, J.; Martens, J.K.; Berden, W.C.M. ; Oomens, J.
2019, Article / Letter to editor (Nature Astronomy, (2019))

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