Browsing by Author "Oomens, J."

Direct Experimental Characterization of Glycosyl Cations by Infrared Ion Spectroscopy

Elferink, Hidde; Severijnen, M.E.; Martens, J.K.; Mensink, R.A.; Berden, G. ; Oomens, J. ; Rutjes, Floris P.J.T. ; Rijs, A.M.; Boltje, T.J.

2018, Article / Letter to editor (Journal of the American Chemical Society, vol. 140, iss. 19, (2018), pp. 6034-6038)

Spectroscopie in actie - van astrochemie tot biomarker discovery

Oomens, J.

2018, Lecture

Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy

Martens, J.K.; Berden, G. ; Bentlage, Herman; Coene, K.L.M. ; Engelke, U.F. ; Wishart, D.; Scherpenzeel, M. van; Kluijtmans, L.A. ; Wevers, R.A. ; Oomens, J.

2018, Article / Letter to editor (Journal of Inherited Metabolic Disease, vol. 41, iss. 3, (2018), pp. 367-377)

Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Glutamine Complexes with Zn2+ and Cd2+

Boles, G.C.; Coates, R.A.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 35, (2017), pp. 12394-12406)

Gas-phase Conformations and N-Glycosidic Bond Stabilities of Sodium Cationized 2′-Deoxyguanosine and Guanosine: Sodium Cations Preferentially Bind to the Guanine Residue

Zhu, Y.; Hamlow, L.A.; He, C.; Lee, J.K.; Gao, J.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, (2017), pp. 1-41)

Revealing disparate chemistries of protactinium and uranium. Synthesis of the molecular uranium tetroxide anion, UO4–

de Jong, W.A.; Dau, P.D.; Wilson, R.E.; Marçalo, J.; Van Stipdonk, M.J.; Corcovilos, T.A.; Berden, G. ; Martens, J.K.; Oomens, J. ; Gibson, J.K.

2017, Article / Letter to editor (Inorganic Chemistry, vol. 56, iss. 6, (2017), pp. 3686-3694)

Combined liquid chromatography-infrared ion spectroscopy for identification of regioisomeric drug metabolites

Martens, Jonathan; Koppen, V.; Berden, G. ; Cuyckens, F.; Oomens, J.

2017, Article / Letter to editor (Analytical Chemistry, vol. 89, iss. 8, (2017), pp. 4359-4362)

Preparation of labile Ni+(cyclam) cations in the gas phase using electron-transfer reduction through ion–ion recombination in an ion trap and structural characterization with vibrational spectroscopy

Munshi, M.U.; Craig, S.M.; Berden, G. ; Martens, J.K.; DeBlase, A.F.; Foreman, D.J.; McLuckey, S.A.; Oomens, J. ; Johnson, M.A.

2017, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 8, iss. 20, (2017), pp. 5047-5052)

Gas-phase complexes of Ni2+ and Ca2+ with deprotonated histidylhistidine (HisHis): A model case for polyhistidyl-metal binding motifs

Peckelsen, K.; Martens, J.K.; Berden, G. ; Oomens, J. ; Dunbar, R.C.; Meijer, A.J.H.M.; Schäfer, M.

2017, Article / Letter to editor (Journal of Molecular Spectroscopy, vol. 332, (2017), pp. 38-44)

Intramolecular proton transfer from one ether oxygen to another

Oomens, J. ; Berden, G. ; Martens, J.K.; Morton, T.H.

2017, Article / Letter to editor (International Journal of Mass Spectrometry, vol. 418, (2017), pp. 188-192)

Low-Frequency CH Stretch Vibrations of Free Alkoxide Ions

Oomens, J. ; Berden, G. ; Morton, T.H.

2017, Article / Letter to editor (Angewandte Chemie, vol. 129, iss. 1, (2017), pp. 223-226)

The anharmonic quartic force field infrared spectra of hydrogenated and methylated PAHs

Huang, X.; Petrignani, A. ; Oomens, J. ; Buma, W.J.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, (2017), pp. 1-9)

Irmpd Spectroscopy Sheds New (Infrared) Light on the Sulfate Pattern of Carbohydrates

Schindler, B.; Barnes, L.; Gray, C.J.; Chambert, S.; Flitsch, S.L.; Oomens, J. ; Daniel, R.; Allouche, A.R.; Compagnon, I.

2017, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 121, iss. 10, (2017), pp. 2114-2120)

Cleaving Off Uranyl Oxygens through Chelation: A Mechanistic Study in the Gas Phase

Abergel, R.J.; Jong, W.A.; Deblonde, G.J.-P.; Dau, P.D.; Captain, I.; Eaton, T.M.; Martens, J.K.; Berden, G. ; Oomens, J. ; Gibson, J.K.

2017, Article / Letter to editor (Inorganic Chemistry, vol. 56, iss. 21, (2017), pp. 12930-12937)

Water microsolvation can switch the binding mode of Ni(II) with small peptides

Dunbar, R.C.; Martens, Jonathan; Berden, G. ; Oomens, J.

2017, Article / Letter to editor (Journal of Physical Chemistry Letters, vol. 8, iss. 12, (2017), pp. 2634-2638)

Structure and dissociation pathways of protonated tetralin (1,2,3,4-tetrahydronaphthalene)

Vala, M.; Oomens, J. ; Berden, G.

2017, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 121, iss. 24, (2017), pp. 4606-4612)

Benchmark Ditopic Binding of Cl- and Cs+ by the Macrocycle Hexacyclen

Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2017, Article / Letter to editor (Chemphyschem, vol. 18, iss. 10, (2017), pp. 1324-1332)

Influence of Transition Metal Cationization versus Sodium Cationization and Protonation on the Gas-Phase Tautomeric Conformations and Stability of Uracil: Application to [Ura+Cu](+) and [Ura+Ag]().

Akinyemi, T.E.; Wu, R.R.; Nei, Y.w.; Cunningham, N.A.; Roy, H.A.; Steill, J.D.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 11, (2017), pp. 2438-2453)

Infrared multiple-photon dissociation action spectroscopy of the b(2)(+) ion from PPG: Evidence of third residue affecting b(2)(+) fragment structure

Poutsma, J.C.; Martens, J.K.; Oomens, J. ; Maitre, P.; Steinmetz, V.; Bernier, M.; Jia, M.X.; Wysocki, V.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 7, (2017), pp. 1482-1488)

Gas-phase conformations and N-glycosidic bond stabilities of sodium cationized 2 '-deoxyguanosine and guanosine: Sodium cations preferentially bind to the guanine residue

Zhu, Y.; Hamlow, L.A.; He, C.C.; Lee, J.K.; Gao, J.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of Physical Chemistry B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical, vol. 121, iss. 16, (2017), pp. 4048-4060)

IRMPD Action Spectroscopy, ER-CID Experiments, and Theoretical Studies of Sodium Cationized Thymidine and 5-Methyluridine: Kinetic Trapping During the ESI Desolvation Process Preserves the Solution Structure of [Thd+Na]().

Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Strobehn, S.F.; Gao, J.; Munshi, M.U.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 11, (2017), pp. 2423-2437)

N3 and O2 protonated conformers of the cytosine mononucleotides coexist in the gas phase

Wu, R.R.; Hamlow, L.A.; He, C.C.; Nei, Y.w.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 28, iss. 8, (2017), pp. 1638-1646)

Isolated complexes of the amino acid arginine with polyether and polyamine macrocycles, the role of proton transfer

Aviles-Moreno, J.R.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 46, (2017), pp. 31345-31351)

Hydrogen tunneling above room temperature evidenced by infrared ion spectroscopy

Schäfer, M.; Peckelsen, K.; Paul, M.; Martens, Jonathan; Oomens, J. ; Berden, G. ; Berkessel, A.; Meijer, A.J.H.M.

2017, Article / Letter to editor (Journal of the American Chemical Society, vol. 139, iss. 16, (2017), pp. 5779-5786)

Isolated alkali cation complexes of the antibiotic ionophore nonactin: Correlation with crystalline structures

Aviles-Moreno, J.R.; Gamez, F.; Berden, G. ; Oomens, J. ; Martinez-Haya, B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 23, (2017), pp. 14984-14991)

Effects of sodium cationization versus protonation on the conformations and N-glycosidic bond stabilities of sodium cationized Urd and dUrd: Solution conformation of [Urd+Na]+ is preserved upon ESI

Zhu, Y.; Roy, H.A.; Cunningham, N.A.; Strobehn, S.F.; Gao, J.; Munshi, M.U.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 27, (2017), pp. 17637-17652)

Probing the geometry reorganization from solution to gas-phase in putrescine derivatives by IRMPD, H-1-NMR and theoretical calculations

Correra, T.C.; Fernandes, A.S.; Reginato, M.M.; Ducati, L.C.; Berden, G. ; Oomens, J.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 35, (2017), pp. 24330-24340)

The intrinsic basicity of the phosphate backbone exceeds that of uracil and thymine residues: protonation of the phosphate moiety is preferred over the nucleobase for pdThd and pUrd

Wu, R.R.; Hamlow, L.A.; He, C.C.; Nei, Y.w.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 45, (2017), pp. 30351-30361)

Hydrogen Liberation from Gaseous 2-Bora-1,3-diazacycloalkanium Cations.

Bendo, J.A.; Martens, J.K.; Berden, G. ; Oomens, J. ; Morton, T.H.

2017, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 121, iss. 41, (2017), pp. 7910-7916)

Correction: structural characterization of gas-phase cysteine and cysteine methyl ester complexes with zinc and cadmium dications by infrared multiple photon dissociation spectroscopy (vol 17, pg 25799, 2015)

Coates, R.A.; McNary, C.P.; Boles, G.C.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 28, (2017), pp. 18777-18778)

Correction: Zn2+ and cd2+ cationized serine complexes: Infrared multiple photon dissociation spectroscopy and density functional theory investigations (vol 18, pg 22434, 2016)

Coates, R.A.; Boles, G.C.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 27, (2017), pp. 18100-18101)

Ergothioneine and related histidine derivatives in the gas phase: Tautomer structures determined by IRMPD spectroscopy and theory

Peckelsen, K.; Martens, J.K.; Czympiel, L.; Oomens, J. ; Berden, G. ; Grundemann, D.; Meijer, A.J.H.M.; Schafer, M.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 34, (2017), pp. 23362-23372)

Gas-phase vibrational spectroscopy of triphenylamine: The effect of charge on structure and spectra

Munshi, M.U.; Berden, G. ; Martens, J.K.; Oomens, J.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 30, (2017), pp. 19881-19889)

Facile pentagon formation in the dissociation of polyaromatics

Haas, A.J. de; Oomens, J. ; Bouwman, J.

2017, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 19, iss. 4, (2017), pp. 2974-2980)

Molecular identification in metabolomics using infrared ion spectroscopy

Martens, J.K.; Berden, G. ; Outersterp, R.E. van ; Kluijtmans, L.A.J. ; Engelke, U.F.H. ; Karnebeek, C.D. van; Wevers, R.A. ; Oomens, J.

2017, Article / Letter to editor (Scientific Reports, vol. 7, (2017), article 3363)

Spectroscopic evidence for the formation of pentalene(+) in the dissociative ionization of naphthalene

Bouwman, J.; Haas, A.J. de; Oomens, J.

2016, Article / Letter to editor (Chemical Communications, vol. 52, iss. 12, (2016), pp. 2636-2638)

Photoleucine Survives Backbone Cleavage by Electron Transfer Dissociation. A Near-UV Photodissociation and Infrared Multiphoton Dissociation Action Spectroscopy Study

Shaffer, C.J.; Martens, J.K.; Marek, A.; Oomens, J. ; Turecek, F.

2016, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 27, iss. 7, (2016), pp. 1176-1185)

The anharmonic quartic force field infrared spectra of five non-linear polycyclic aromatic hydrocarbons: Benz[a]anthracene, chrysene, phenanthrene, pyrene, and triphenylene

Mackie, C.J.; Candian, A.; Huang, X.C.; Maltseva, E.; Petrignani, A. ; Oomens, J. ; Mattioda, A.L.; Buma, W.J.; Lee, T.J.; Tielens, A.

2016, Article / Letter to editor (Journal of Chemical Physics, vol. 145, iss. 8, (2016), pp. 10-20)

2,4-Dihydroxy and O2 Protonated Tautomers of dThd and Thd Coexist in the Gas Phase: Methylation Alters Protonation Preferences versus dUrd and Urd

Wu, R.R.; Yang, B.; Frieler, C.E.; Berden, G. ; Oomens, J. ; Rodgers, M.T.

2016, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 27, iss. 3, (2016), pp. 410-421)

Interaction of Cu+ with cytosine and formation of i-motif-like C-M+-C complexes: alkali versus coinage metals

Gao, J.; Berden, G. ; Rodgers, M.T.; Oomens, J.

2016, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 18, iss. 10, (2016), pp. 7269-7277)

Alkali-Metal-Ion-Assisted Hydrogen Atom Transfer in the Homocysteine Radical

Lesslie, M.; Lau, J.K.C.; Lawler, J.T.; Siu, K.W.M.; Oomens, J. ; Berden, G. ; Hopkinson, A.C.; Ryzhov, V.

2016, Article / Letter to editor (Chemistry : a European Journal, vol. 22, iss. 7, (2016), pp. 2243-2246)

Breakdown Products of Gaseous Polycyclic Aromatic Hydrocarbons Investigated with Infrared Ion Spectroscopy

Petrignani, A. ; Vala, M.; Eyler, J.R.; Tielens, A.; Berden, G. ; Meer, A.F.G. van der; Redlich, B. ; Oomens, J.

2016, Article / Letter to editor (The Astrophysical Journal, vol. 826, iss. 1, (2016), pp. 10-20)

Structural identification of electron transfer dissociation products in mass spectrometry using infrared ion spectroscopy

Martens, J.K.; Grzetic, J.; Berden, G. ; Oomens, J.

2016, Article / Letter to editor (Nature Communications, vol. 7, (2016), pp. 7-14)

Structures of Fluoranthene Reagent Anions Used in Electron Transfer Dissociation and Proton Transfer Reaction Tandem Mass Spectrometry

Martens, J.K.; Berden, G. ; Oomens, J.

2016, Article / Letter to editor (Analytica Chimica Acta, vol. 88, iss. 12, (2016), pp. 6126-6129)

Zn2+ and Cd2+ cationized serine complexes: infrared multiple photon dissociation spectroscopy and density functional theory investigations

Coates, R.A.; Boles, G.C.; McNary, C.P.; Berden, G. ; Oomens, J. ; Armentrout, P.B.

2016, Article / Letter to editor (PCCP Physical Chemistry Chemical Physics, vol. 18, iss. 32, (2016), pp. 22434-22445)

IRMPD Spectroscopy of Metalated Flavins: Structure and Bonding of Lumiflavin Complexes with Alkali and Coinage Metal Ions

Nieto, P.; Gunther, A.; Berden, G. ; Oomens, J. ; Dopfer, O.

2016, Article / Letter to editor (The Journal of Physical Chemistry A, vol. 120, iss. 42, (2016), pp. 8297-8308)

Deamidation reactions of protonated asparagine and glutamine investigated by ion spectroscopy

Kempkes, L.J.M.; Martens, J.K.; Grzetic, J.; Berden, G. ; Oomens, J.

2016, Article / Letter to editor (Rapid Communications in Mass Spectrometry, vol. 30, iss. 4, (2016), pp. 483-490)

Deamidation Reactions of Asparagine- and Glutamine-Containing Dipeptides Investigated by Ion Spectroscopy

Kempkes, L.J.M.; Martens, J.K.; Grzetic, J.; Berden, G. ; Oomens, J.

2016, Article / Letter to editor (Journal of the American Society for Mass Spectrometry, vol. 27, iss. 11, (2016), pp. 1855-1869)

Electron-flux infrared response to varying pi-bond topology in charged aromatic monomers

Álvaro Galué, H.; Oomens, J. ; Buma, W.J.; Redlich, B.

2016, Article / Letter to editor (Nature Communications, vol. 7, (2016), pp. 1-12, article 12633)

High-resolution IR Absorption Spectroscopy of Polycyclic Aromatic Hydrocarbons in the 3 μm Region: Role of Periphery

Maltseva, E.; Petrignani, A. ; Candian, A.; Mackie, C.J.; Huang, X.; Lee, T.J.; Tielens, A.G.G.M.; Oomens, J. ; Buma, W.J.

2016, Article / Letter to editor (The Astrophysical Journal, vol. 831, (2016), pp. 1-11, article 58)

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