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Full Text	Issue Date	Title	Author(s)
	2012	Computational analysis of transcription regulation : employing high-throughput technology to understand fundamental biology	Heeringen, S.J. van
	2012	Genome-Wide Profiling of Liver X Receptor, Retinoid X Receptor, and Peroxisome Proliferator-Activated Receptor alpha in Mouse Liver Reveals Extensive Sharing of Binding Sites	Boergesen, M.; Pedersen, T. A.; Gross, B.; Heeringen, S.J. van; Hagenbeek, D.; Bindesboll, C.; Caron, Sandrine; Lalloyer, F.; Steffensen, K.R.; Nebb, H.I.; Gustafsson, J.A.; Stunnenberg, H.G.; Staels, B.; Mandrup, S.
	2012	Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis	Bogdanovic, O.; Fernandez-Minan, A.; Tena, J.J.; Calle-Mustienes, E. de la; Hidalgo, C.; Kruysbergen, I. van; Heeringen, S.J. van; Veenstra, G.J.C.; Gomez-Skarmeta, J.L.
	2011	The epigenome in early vertebrate development	Bogdanovic, O.; Heeringen, S.J. van; Veenstra, G.J.C.
	2011	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Heeringen, S.J. van; Akhtar, W.; Jacobi, U.G.; Akkers, R.C.; Suzuki, Y.; Veenstra, G.J.C.
	2011	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	Bogdanovic, O.; Long, S.W.; Heeringen, S.J. van; Brinkman, A.B.; Gomez-Skarmeta, J.L.; Stunnenberg, H.G.; Jones, P.L.; Veenstra, G.J.C.
	2011	Role of p53 Serine 46 in p53 Target Gene Regulation	Smeenk, L.; Heeringen, S.J. van; Koeppel, M.; Gilbert, B.; Janssen-Megens, E.M.; Stunnenberg, H.G.; Lohrum, M.
	2011	Crosstalk between c-Jun and TAp73 alpha/beta contributes to the apoptosis-survival balance	Koeppel, M.; Heeringen, S.J. van; Kramer, D.; Smeenk, L.; Janssen-Megens, E.M.; Hartmann, M.; Stunnenberg, H.G.; Lohrum, M.
	2011	GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments	Heeringen, S.J. van; Veenstra, G.J.C.
	2010	Chip-chip designs to interrogate the genome of xenopus embryos for transcription factor binding and epigenetic regulation	Akkers, R.C.; Heeringen, S.J. van; Manak, J.R.; Green, R.D.; Stunnenberg, H.G.; Veenstra, G.J.C.
	2010	Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus.	Kouwenhoven, E.N.; Heeringen, S.J. van; Tena, J.J.; Oti, M.O.; Dutilh, B.E.; Alonso, M.E.; Calle-Mustienes, E. de la; Smeenk, L.; Rinne, T.K.; Parsaulian, L.; Bolat, E.; Jurgelenaite, R.; Huynen, M.A.; Hoischen, A.; Veltman, J.A.; Brunner, H.G.; Roscioli, T.; Oates, E.; Wilson, M.; Manzanares, M.; Gomez-Skarmeta, J.L.; Stunnenberg, H.G.; Lohrum, M.A.E.; Bokhoven, J.H.L.M. van; Zhou, H.
	2009	ChIP-Seq of ER alpha and RNA polymerase II defines genes differentially responding to ligands	Welboren, W.J.; Driel, M.A. van; Janssen-Megens, E.M.; Heeringen, S.J. van; Sweep, F.C.; Span, P.N.; Stunnenberg, H.G.
	2009	A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos.	Akkers, R.C.; Heeringen, S.J. van; Jacobi, U.G.; Janssen-Megens, E.M.; Francoijs, K.J.; Stunnenberg, H.G.; Veenstra, G.J.C.
	2009	ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands.	Welboren, W.; Driel, M.A. van; Janssen-Megens, E.M.; Heeringen, S.J. van; Sweep, C.G.J.; Span, P.N.; Stunnenberg, H.G.
	2008	Characterization of genome-wide p53-binding sites upon stress response	Smeenk, L.; Heeringen, S.J. van; Koeppel, M.; Driel, M.A. van; Bartels, S.J.J.; Akkers, R.C.; Denissov, S.; Stunnenberg, H.G.; Lohrum, M.

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