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| Full Text | Issue Date | Title | Author(s) |  | 2012 | A three-dimensional topology of complex I inferred from evolutionary correlations | Kensche, P.R.; Dos Santos Duarte, G.I.; Huynen, M.A. |
 | 2011 | The organellar genome and metabolic potential of the hydrogen-producing mitochondrion of Nyctotherus ovalis | Graaf, R.M. de; Ricard, G.N.S.; Alen, T.A. van; Duarte, I.; Dutilh, B.E.; Burgtorf, C.; Kuiper, J.W.; Staay, G.W.M. van der; Tielens, A.G.; Huynen, M.A.; Hackstein, J.H. |
| | 2011 | Flux measurement selection in metabolic networks | Megchelenbrink, W.L.; Huijnen, Martijn; Marchiori, E. |
| | 2011 | FACIL: Fast and Accurate Genetic Code Inference and Logo | Dutilh, B.E.; Jurgelenaite, R.; Szklarczyk, R.J.; van Hijum, S.A.; Harhangi, H.R.; Schmid, M.; Wild, B. de; Francoijs, K.J.; Stunnenberg, H.G.; Strous, M.; Jetten, M.S.M.; Camp, H.J.M. op den; Huynen, M.A. |
| | 2011 | MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters | Jansen, B.J.H.; Sama, I.E.; Eleveld-Trancikova, D.; Hout-Kuijer, M.A. van; Jansen, J.H.; Huynen, M.A.; Adema, G.J. |
| | 2011 | Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication | Huerta-Cepas, J.; Dopazo, J.; Huynen, M.A.; Gabaldon, T. |
| | 2011 | TEFM (c17orf42) is necessary for transcription of human mtDNA | Minczuk, M.; He, J.; Duch, A.M.; Ettema, T.J.G.; Chlebowski, A.; Dzionek, K.; Nijtmans, L.G.J.; Huynen, M.A.; Holt, I.J. |
 | 2011 | NDUFB7 and NDUFA8 are located at the intermembrane surface of complex I | Szklarczyk, R.J.; Wanschers, B.F.J.; Nabuurs, S.B.; Nouws, J.; Nijtmans, L.G.J.; Huynen, M.A. |
| | 2011 | Restoration of complex V deficiency caused by a novel deletion in the human TMEM70 gene normalizes mitochondrial morphology | Jonckheere, A.I.; Huigsloot, M.; Lammens, M.M.Y.; Jansen, J.; Heuvel, L.P.W.J. van den; Spiekerkoetter, U.; Kleist-Retzow, J.C. von; Forkink, M.; Koopman, W.J.H.; Szklarczyk, R.J.; Huynen, M.A.; Fransen, J.; Smeitink, J.A.M.; Rodenburg, R.J.T. |
| | 2011 | A mutation in C2orf64 causes impaired cytochrome c oxidase assembly and mitochondrial cardiomyopathy | Huigsloot, M.; Nijtmans, L.G.J.; Szklarczyk, R.J.; Baars, M.J.; Brand, M.A.M. van den; Hendriksfranssen, M.G.; Heuvel, L.P.W.J. van den; Smeitink, J.A.M.; Huynen, M.A.; Rodenburg, R.J.T. |
| | 2010 | Measuring the physical cohesiveness of proteins using physical interaction enrichment. | Sama, I.E.; Huynen, M.A. |
| | 2010 | Quantitative proteome profiling of respiratory virus-infected lung epithelial cells. | Diepen, A. van; Brand, H.K.; Sama, I.E.; Lambooy, L.H.J.; Heuvel, L.P.W.J. van den; Well, L. van der; Huijnen, M.A.; Osterhaus, A.D.; Andeweg, A.C.; Hermans, P.W.M. |
| | 2010 | The alpha-kinase family: an exceptional branch on the protein kinase tree. | Middelbeek, J.A.J.; Clark, K.; Venselaar, H.; Huynen, M.A.; Leeuwen, F.N. van |
| | 2010 | Mosaic origin of the mitochondrial proteome. | Szklarczyk, R.J.; Huynen, M.A. |
| | 2010 | Dominant processes during human dendritic cell maturation revealed by integration of proteome and transcriptome at the pathway level. | Buschow, S.I.; Lasonder, E.; Deutekom, H.W. van; Oud, M.M.; Beltrame, L.; Huijnen, M.A.; Vries, I.J.M. de; Figdor, C.G.; Cavalieri, D. |
| | 2010 | Acyl-CoA dehydrogenase 9 is required for the biogenesis of oxidative phosphorylation complex I. | Nouws, J.; Nijtmans, L.G.J.; Houten, S.M.; Brand, M. van den; Huijnen, M.A.; Venselaar, H.; Hoefs, S.J.G.; Gloerich, J.; Kronick, J.; Hutchin, T.; Willems, P.H.G.M.; Rodenburg, R.J.T.; Wanders, R.; Heuvel, L.P.W.J. van den; Smeitink, J.A.M.; Vogel, R.O. |
| | 2010 | A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome. | Richter, R.; Rorbach, J.; Pajak, A.; Smith, P.M.; Wessels, H.J.; Huynen, M.A.; Smeitink, J.A.M.; Lightowlers, R.N.; Chrzanowska-Lightowlers, Z.M. |
| | 2010 | Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus. | Kouwenhoven, E.N.; Heeringen, S.J. van; Tena, J.J.; Oti, M.O.; Dutilh, B.E.; Alonso, M.E.; Calle-Mustienes, E. de la; Smeenk, L.; Rinne, T.K.; Parsaulian, L.; Bolat, E.; Jurgelenaite, R.; Huynen, M.A.; Hoischen, A.; Veltman, J.A.; Brunner, H.G.; Roscioli, T.; Oates, E.; Wilson, M.; Manzanares, M.; Gomez-Skarmeta, J.L.; Stunnenberg, H.G.; Lohrum, M.A.E.; Bokhoven, J.H.L.M. van; Zhou, H. |
| | 2009 | The hydrogenosomes of Psalteriomonas lanterna | Graaf, R.M. de; Duarte, I.; Alen, T. van; Kuiper, J.W.P.; Schotanus, K.; Rosenberg, J.; Huynen, M.A.; Hackstein, J.H.P. |
| | 2009 | Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication. | Szklarczyk, R.J.; Huynen, M.A. |
| | 2009 | The biological coherence of human phenome databases. | Oti, M.O.; Huynen, M.A.; Brunner, H.G. |
| | 2009 | Asymmetric relationships between proteins shape genome evolution. | Notebaart, R.A.; Kensche, P.R.; Huynen, M.A.; Dutilh, B.E. |
| | 2009 | Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. | Dutilh, B.E.; Huynen, M.A.; Strous, M. |
| | 2009 | Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation. | Parmley, J.L.; Huynen, M.A. |
| | 2009 | Mitochondrial proteome evolution and genetic disease. | Huynen, M.A.; Hollander, M. de; Szklarczyk, R.J. |
| | 2009 | Mutations in NDUFAF3 (C3ORF60), encoding an NDUFAF4 (C6ORF66)-interacting complex I assembly protein, cause fatal neonatal mitochondrial disease. | Saada, A.; Vogel, R.O.; Hoefs, S.J.G.; Brand, M.A.M. van den; Wessels, H.J.; Willems, P.H.G.M.; Venselaar, H.; Shaag, A.; Barghuti, F.; Reish, O.; Shohat, M.; Huijnen, M.A.; Smeitink, J.A.M.; Heuvel, L.P.W.J. van den; Nijtmans, L.G.J. |
| | 2009 | The hydrogenosomes of Psalteriomonas lanterna. | Graaf, R.M. de; Duarte, I.; Alen, T.A. van; Kuiper, J.W.; Schotanus, K.; Rosenberg, J.; Huynen, M.A.; Hackstein, J.H. |
| | 2009 | The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus. | Graaf, R.M. de; Alen, T.A. van; Dutilh, B.E.; Kuiper, J.W.P.; Zoggel, H.J. van; Huynh, M.B.; Gortz, H.D.; Huynen, M.A.; Hackstein, J.H.P. |
| | 2008 | Evolution of closely linked gene pairs in vertebrate genomes | Franck, E.; Hulsen, T.; Huynen, M.A.; Jong, W.W.W. de; Lubsen, N.H.; Madsen, O. |
| | 2008 | Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity | Lasonder, E.; Janse, C.J.; Gemert, G.J. van; Mair, G.R.; Vermunt, A.M.; Douradinha, B.G.; Noort, V. van; Huynen, M.A.; Luty, A.J.; Kroeze, H.; Khan, S.M.; Sauerwein, R.W.; Waters, A.P.; Mann, M.; Stunnenberg, H.G. |
| | 2008 | Phenome connections. | Oti, M.O.; Huynen, M.A.; Brunner, H.G. |
| | 2008 | Macronuclear genome structure of the ciliate Nyctotherus ovalis : single-gene chromosomes and tiny introns | Ricard, G.; Graaf, R.M. de; Dutilh, B.E.; Duarte, I.; Alen, T.A. van; Hoek, A.H. van; Boxma, B.; Staay, G.W.M. van der; Moon-van der Staay, S.Y.; Chang, W.; Landweber, L.F.; Hackstein, J.H.P.; Huijnen, M.A. |
| | 2008 | Conservation of divergent transcription in fungi. | Kensche, P.R.; Oti, M.O.; Dutilh, B.E.; Huynen, M.A. |
| | 2008 | Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution. | Kensche, P.R.; Noort, V. van; Dutilh, B.E.; Huynen, M.A. |
| | 2008 | Signature genes as a phylogenomic tool. | Dutilh, B.E.; Snel, B.; Ettema, T.J.G.; Huynen, M.A. |
| | 2008 | Complex fate of paralogs | Szklarczyk, R.; Huynen, M.A.; Snel, B. |
| | 2008 | Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity. | Lasonder, E.; Janse, C.J.; Gemert, G.J.A. van; Mair, G.R.; Vermunt, A.M.W.; Douradinha, B.G.; Noort, V. van; Huynen, M.A.; Luty, A.J.F.; Kroeze, H.; Khan, S.M.; Sauerwein, R.W.; Waters, A.P.; Mann, M.; Stunnenberg, H.G. |
| | 2008 | Signature, a web server for taxonomic characterization of sequence samples using signature genes. | Dutilh, B.E.; He, Y.; Hekkelman, M.L.; Huynen, M.A. |
| | 2008 | The iron-sulphur protein Ind1 is required for effective complex I assembly. | Bych, K.; Kerscher, S.; Netz, D.J.; Pierik, A.J.; Zwicker, K.; Huynen, M.A.; Lill, R.; Brandt, U.; Balk, J. |
| | 2008 | Identification of Nipsnap1 as a novel auxiliary protein inhibiting TRPV6 activity. | Schoeber, J.P.H.; Topala, C.N.; Lee, K.P.; Lambers, T.T.; Ricard, G.; Kemp, AW van der; Huynen, M.A.; Hoenderop, J.G.J.; Bindels, R.J.M. |
| | 2008 | Conserved co-expression for candidate disease gene prioritization. | Oti, M.O.; Reeuwijk, J. van; Huynen, M.A.; Brunner, H.G. |
| | 2008 | Evolution of closely linked gene pairs in vertebrate genomes. | Franck, E.; Hulsen, T.; Huynen, M.A.; Jong, W.W.W. de; Lubsen, N.H.; Madsen, O. |
| | 2007 | Optimized design and assessment of whole genome tiling arrays | Graf, S.; Nielsen, F. G. G.; Kurtz, S.; Huijnen, M.A.; Birney, E.; Stunnenberg, H.G.; Flicek, P. |
| | 2007 | Hydrogenosomes (and related organelles, either) are not the same | Hackstein, J.H.P.; Tjaden, J.; Koopman, W.J.H.; Huijnen, M.A.; Martin, William F.; Müller, Miklós |
| | 2007 | From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism. | Gabaldon, T.; Huynen, M.A. |
| | 2007 | From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism | Gabaldon, T.; Huynen, M.A. |
| | 2007 | Assessment of phylogenomic and orthology approaches for phylogenetic inference. | Dutilh, B.E.; Noort, V. van; Heijden, R.T.J.M. van der; Boekhout, T.; Snel, B.; Huynen, M.A. |
| | 2007 | The [FeFe] hydrogenase of Nyctotherus ovalis has a chimeric origin | Boxma, B.; Ricard, G.; Hoek, A.H.A.M. van; Severing, E.; Moon-van der Staay, S.Y.; Staay, G.W.M. van der; Alen, T.A. van; Graaf, R.M. de; Cremers, G.; Kwantes, M.; McEwan, N.R.; Newbold, C.J.; Jouany, J.P.; Michalowski, T.; Pristas, P.; Huynen, M.A.; Hackstein, J.H.P. |
| | 2007 | Orthology prediction at scalable resolution by phylogenetic tree analysis | Heijden, R.T.J.M. van der; Snel, B.; Noort, V. van; Huynen, M.A. |
| | 2007 | Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution | Kensche, P.R.; Noort, V. van; Dutilh, B.E.; Huynen, M.A. |
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